Deep MRI brain extraction: A 3D convolutional neural network for skull stripping

NeuroImage ◽  
2016 ◽  
Vol 129 ◽  
pp. 460-469 ◽  
Author(s):  
Jens Kleesiek ◽  
Gregor Urban ◽  
Alexander Hubert ◽  
Daniel Schwarz ◽  
Klaus Maier-Hein ◽  
...  
NeuroImage ◽  
2018 ◽  
Vol 175 ◽  
pp. 32-44 ◽  
Author(s):  
Gengyan Zhao ◽  
Fang Liu ◽  
Jonathan A. Oler ◽  
Mary E. Meyerand ◽  
Ned H. Kalin ◽  
...  

2021 ◽  
Author(s):  
Jeevitha R ◽  
Selvaraj D

Brain tumours has huge heterogeneity and there is always a familiarity between normal and abnormal tissues and hence the extraction of tumour portions from normal images becomes persistent. In this paper, MRI brain tumor detection is performed from a brain images using Fuzzy C-means(FCM) algorithm and sebsequently Convolutional Neural Network(CNN) algorithm is employed. Here, firstly preprocessing step is performed by Skull Stripping algorithm followed by Segmentation process. Fuzzy C-means algorithm is used to segment the Cerebrospinal Fluid(CSF), Grey matter(GM) and White Matter(WM) from the database. The third part is to extract features to find whether the tumor is present or not, here eleven features are extracted like mean, entropy, S.D(Standard Deviation). The final part is the classification process done by Convolutional Neural Network(CNN) in which it is able to differentiate whether the input image is normal image or an abnormal image. Compared to other methods, here the values of the features extracted are higher for normal images than for abnormal Images and it is shown from the graphs drawn from the extracted features.


2021 ◽  
Vol 2021 ◽  
pp. 1-14
Author(s):  
Sahar Gull ◽  
Shahzad Akbar ◽  
Habib Ullah Khan

Brain tumor is a fatal disease, caused by the growth of abnormal cells in the brain tissues. Therefore, early and accurate detection of this disease can save patient’s life. This paper proposes a novel framework for the detection of brain tumor using magnetic resonance (MR) images. The framework is based on the fully convolutional neural network (FCNN) and transfer learning techniques. The proposed framework has five stages which are preprocessing, skull stripping, CNN-based tumor segmentation, postprocessing, and transfer learning-based brain tumor binary classification. In preprocessing, the MR images are filtered to eliminate the noise and are improve the contrast. For segmentation of brain tumor images, the proposed CNN architecture is used, and for postprocessing, the global threshold technique is utilized to eliminate small nontumor regions that enhanced segmentation results. In classification, GoogleNet model is employed on three publicly available datasets. The experimental results depict that the proposed method is achieved average accuracies of 96.50%, 97.50%, and 98% for segmentation and 96.49%, 97.31%, and 98.79% for classification of brain tumor on BRATS2018, BRATS2019, and BRATS2020 datasets, respectively. The outcomes demonstrate that the proposed framework is effective and efficient that attained high performance on BRATS2020 dataset than the other two datasets. According to the experimentation results, the proposed framework outperforms other recent studies in the literature. In addition, this research will uphold doctors and clinicians for automatic diagnosis of brain tumor disease.


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