scholarly journals Structural Basis for the Activation and Target Site Specificity of CDC7 Kinase

Structure ◽  
2020 ◽  
Vol 28 (8) ◽  
pp. 954-962.e4 ◽  
Author(s):  
Samual D. Dick ◽  
Stefania Federico ◽  
Siobhan M. Hughes ◽  
Valerie E. Pye ◽  
Nicola O'Reilly ◽  
...  
2003 ◽  
Vol 15 (8) ◽  
pp. 1771-1780 ◽  
Author(s):  
Akio Miyao ◽  
Katsuyuki Tanaka ◽  
Kazumasa Murata ◽  
Hiromichi Sawaki ◽  
Shin Takeda ◽  
...  
Keyword(s):  

2019 ◽  
Vol 39 (13) ◽  
Author(s):  
Angad Garg ◽  
Yehuda Goldgur ◽  
Ana M. Sanchez ◽  
Beate Schwer ◽  
Stewart Shuman

ABSTRACT Pho7 is the Schizosaccharomyces pombe fission yeast Zn2Cys6 transcriptional factor that drives a response to phosphate starvation in which phosphate acquisition genes are upregulated. Here we report a crystal structure at 1.6-Å resolution of the Pho7 DNA-binding domain (DBD) bound at its target site 2 in the pho1 promoter (5′-TCGGAAATTAAAAA). Comparison to the previously reported structure of Pho7 DBD in complex with its binding site in the tgp1 promoter (5′-TCGGACATTCAAAT) reveals shared determinants of target site specificity as well as variations in the protein-DNA interface that accommodate different promoter DNA sequences. Mutagenesis of Pho7 amino acids at the DNA interface identified nucleobase contacts at the periphery of the footprint that are essential for the induction of pho1 expression in response to phosphate starvation and for Pho7 binding to site 1 in the pho1 promoter.


2019 ◽  
Vol 76 (3) ◽  
pp. 423-436.e3 ◽  
Author(s):  
Jonas Westergaard Højfeldt ◽  
Lin Hedehus ◽  
Anne Laugesen ◽  
Tülin Tatar ◽  
Laura Wiehle ◽  
...  
Keyword(s):  

2011 ◽  
Vol 55 (11) ◽  
pp. 5370-5373 ◽  
Author(s):  
Gaelle Cuzon ◽  
Thierry Naas ◽  
Patrice Nordmann

ABSTRACTThe carbapenemase geneblaKPC, which is rapidly spreading worldwide, is located on a Tn3-based transposon, Tn4401. In a transposition-conjugation assay, Tn4401was able to mobilizeblaKPC-2gene at a frequency of 4.4 × 10−6/recipient cell. A 5-bp target site duplication was evidenced upon each insertion without target site specificity. This study demonstrated that Tn4401is an active transposon capable of mobilizingblaKPCgenes at high frequency.


2006 ◽  
Vol 13 (2) ◽  
pp. 140-146 ◽  
Author(s):  
Jean-François Couture ◽  
Evys Collazo ◽  
Glenn Hauk ◽  
Raymond C Trievel

2021 ◽  
Author(s):  
Yao Shen ◽  
Josue Gomez-Blanco ◽  
Michael Thomas Petassi ◽  
Joseph E Peters ◽  
Joaquin Ortega ◽  
...  

Tn7 transposable elements are unique for their highly specific, and sometimes programmable, target-site selection mechanisms and precise insertions. All the elements in the Tn7-family utilize a AAA+ adaptor (TnsC) to coordinates target-site selection with transposase activation and prevent insertions at sites already containing a Tn7 element. Due to its multiple functions, TnsC is considered the linchpin in the Tn7 element. Here we present the high-resolution cryo-EM structure of TnsC bound to DNA using a gain-of-function variant of the protein and a DNA substrate that together recapitulate the recruitment to a specific DNA target site. We find that TnsC forms an asymmetric ring on target DNA that segregates target-site selection and transposase recruitment to opposite faces of the ring. Unlike most AAA+ ATPases, TnsC uses a DNA distortion to find the target site but does not remodel DNA to activate transposition. By recognizing pre-distorted substrates, TnsC creates a built-in regulatory mechanism where ATP-hydrolysis abolishes ring formation proximal to an existing element. This work unveils how Tn7 and Tn7-like elements determine the strict spacing between the target and integration sites.


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