Molecular epidemiology and point mutations in ITS1 and 18S rDNA genes of Eimeria ninakohlyakimovae and E. christenseni isolated from Indian goats

Author(s):  
Rupesh Verma ◽  
Dinesh Kumar Sharma ◽  
K. Gururaj ◽  
Souvik Paul ◽  
P.S. Banerjee ◽  
...  
BMC Neurology ◽  
2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Joonas Lipponen ◽  
Seppo Helisalmi ◽  
Joose Raivo ◽  
Ari Siitonen ◽  
Hiroshi Doi ◽  
...  

Abstract Background The genetics of cerebellar ataxia is complex. Hundreds of causative genes have been identified, but only a few cause more than single cases. The spectrum of ataxia-causing genes differs considerably between populations. The aim of the study was to investigate the molecular epidemiology of ataxia in the Finnish population. Patients and methods All patients in hospital database were reviewed for the diagnosis of unspecified ataxia. Acquired ataxias and nongenetic ataxias such as those related to infection, trauma or stroke were excluded. Sixty patients with sporadic ataxia with unknown etiology and 36 patients with familial ataxia of unknown etiology were recruited in the study. Repeat expansions in the SCA genes (ATXN1, 2, 3, 7, 8/OS, CACNA1A, TBP), FXN, and RFC1 were determined. Point mutations in POLG, SPG7 and in mitochondrial DNA (mtDNA) were investigated. In addition, DNA from 8 patients was exome sequenced. Results A genetic cause of ataxia was found in 33 patients (34.4%). Seven patients had a dominantly inherited repeat expansion in ATXN8/OS. Ten patients had mitochondrial ataxia resulting from mutations in nuclear mitochondrial genes POLG or RARS2, or from a point mutation m.8561C > G or a single deletion in mtDNA. Interestingly, five patients were biallelic for the recently identified pathogenic repeat expansion in RFC1. All the five patients presented with the phenotype of cerebellar ataxia, neuropathy, and vestibular areflexia (CANVAS). Moreover, screening of 54 patients with Charcot-Marie-Tooth neuropathy revealed four additional patients with biallelic repeat expansion in RFC1, but none of them had cerebellar symptoms. Conclusions Expansion in ATXN8/OS results in the majority of dominant ataxias in Finland, while mutations in RFC1 and POLG are the most common cause of recessive ataxias. Our results suggest that analysis of RFC1 should be included in the routine diagnostics of idiopathic ataxia and Charcot-Marie-Tooth polyneuropathy.


2006 ◽  
Vol 55 (6) ◽  
pp. 703-707 ◽  
Author(s):  
F. Leoni ◽  
C. Amar ◽  
G. Nichols ◽  
S. Pedraza-Díaz ◽  
J. McLauchlin

The characterization of Cryptosporidium using DNA extracted from whole faecal samples collected from 2414 humans with diarrhoea in England between 1985 and 2000 where cryptosporidial oocysts were detected using conventional methods is described. Characterization was achieved by PCR/RFLP and DNA sequencing of fragments of the Cryptosporidium oocyst wall protein and the 18S rDNA genes. Cryptosporidium parvum was detected in 56.1 % of cases, Cryptosporidium hominis in 41.7 % and a mixture of C. parvum and C. hominis in 0.9 %. In the remainder of cases, Cryptosporidium meleagridis (0.9 %), Cryptosporidium felis (0.2 %), Cryptosporidium andersoni (0.1 %), Cryptosporidium canis (0.04 %), Cryptosporidium suis (0.04 %) and the Cryptosporidium cervine type (0.04 %) were detected.


2019 ◽  
Vol 67 (6) ◽  
Author(s):  
Alma E. Garcia-Morales ◽  
Omar Domínguez-Domínguez

Brachionus quadridentatus is a morphologically variable species distributed worldwide. Its taxonomy is confusing due the numerous infrasubspecific variants described in the taxon. Here we explore genetic diversity of certain B. quadridentatus populations, using sequences of COI mtDNA and 18S rDNA genes. With traditional morphology (taxonomic keys), the specimens identified fell into three recognized variants: B. quadridentatus quadridentatus, B. quadridentatus f. brevispinus and B. quadridentatus f. cluniorbicularis. The coalescent species delimitation analysis highly supports the presence of at least three putative species within B. quadridentatus complex in agreement with the phylogenetic result and GMYC analysis with the 18S gene. Nevertheless, the morphological and mitochondrial information show that the variation within each of the three putative species is much more extensive, finding seven monophyletic and highly divergent genetic groups (>10%) that have congruence with the morphotypes found in this study and ABGD analysis, which display clear morphological differences mainly in the diagnostic characters.


2018 ◽  
Vol 9 (3) ◽  
pp. 556-562 ◽  
Author(s):  
Patrícia G. Paulino ◽  
Marcus S. Pires ◽  
Claudia B. da Silva ◽  
Maristela Peckle ◽  
Renata L. da Costa ◽  
...  

2014 ◽  
Vol 12 (3) ◽  
pp. 603-609 ◽  
Author(s):  
Jocicléia Thums Konerat ◽  
Vanessa Bueno ◽  
Lucas Baumgartner ◽  
Isabel Cristina Martins-Santos ◽  
Vladimir Pavan Margarido

B chromosomes are extra chromosomes from the normal chromosomal set, found in different organisms, highlighting their presence on the group of fishes. Callichthys callichthys from the upper Paraná River has a diploid number of 56 chromosomes (26 m-sm + 30 st-a) for both sexes, with the presence of a sporadically acrocentric B chromosome. Moreover, one individual presented a diploid number of 57 chromosomes, with the presence of a morphologically ill-defined acrocentric B chromosome in all analyzed cells. The physical mapping of 5S and 18S rDNA shows multiple 5S rDNA sites and only one pair of chromosomes with 18S sites in C. callichthys, except for two individuals. These two individuals presented a third chromosome bearing NORs (Ag-staining and 18S rDNA) where 5S and 18S rDNA genes are syntenic, differing only in position. The dispersion of the 18S rDNA genes from the main st-achromosome pair 25 to one of the chromosomes from the m-sm pair 4 would have originated two variant individuals, one of which with the ill-defined acrocentric B chromosome. Mechanisms to justify the suggested hypothesis about this B chromosome origin are discussed in the present study.


Genetica ◽  
2006 ◽  
Vol 128 (1-3) ◽  
pp. 159-166 ◽  
Author(s):  
Renata da Rosa ◽  
Elisangela Bellafronte ◽  
Orlando Moreira Filho ◽  
Vladimir Pavan Margarido

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