Use of abundance ratios of somatic coliphages and bacteriophages of Bacteroides thetaiotaomicron GA17 for microbial source identification

2012 ◽  
Vol 46 (19) ◽  
pp. 6410-6418 ◽  
Author(s):  
Maite Muniesa ◽  
Francisco Lucena ◽  
Anicet R. Blanch ◽  
Andrey Payán ◽  
Juan Jofre
2005 ◽  
Vol 71 (11) ◽  
pp. 6838-6844 ◽  
Author(s):  
Laura Mocé-Llivina ◽  
Francisco Lucena ◽  
Juan Jofre

ABSTRACT A new procedure for detecting and counting enteroviruses based on the VIRADEN method applied to 10 liters of seawater was examined. It improved the efficiency of detection by taking into account both the number of positive isolations and numbers found with traditional methods. It was then used to quantify viruses in bathing waters. A number of bacterial indicators and bacteriophages were also tested. Cultivable enteroviruses were detected in 55% of the samples, most of which complied with bacteriological criteria. In contrast, viral genomes were only detected in 20% of the samples by reverse transcription-PCR. Somatic coliphages outnumbered all other indicators. F-specific RNA phages were detected in only 15% of the samples, whereas phages infecting Bacteroides thetaiotaomicron were detected in 70% of samples. A numerical relationship between the numbers of enteroviruses and the numbers of enterococci and somatic coliphages was observed. In situ inactivation experiments showed that viruses persisted significantly longer than the bacterial indicators. Only somatic coliphages and bacteriophages infecting Bacteroides persisted longer than the viruses. These results explain the numbers of enteroviruses and indicators in bathing waters attending the numbers usually found in sewage in the area. Somatic coliphages show a very good potential to predict the risk of viruses being present in bathing waters.


2006 ◽  
Vol 72 (9) ◽  
pp. 5915-5926 ◽  
Author(s):  
Anicet R. Blanch ◽  
Llu�s Belanche-Mu�oz ◽  
Xavier Bonjoch ◽  
James Ebdon ◽  
Christophe Gantzer ◽  
...  

ABSTRACT Several microbes and chemicals have been considered as potential tracers to identify fecal sources in the environment. However, to date, no one approach has been shown to accurately identify the origins of fecal pollution in aquatic environments. In this multilaboratory study, different microbial and chemical indicators were analyzed in order to distinguish human fecal sources from nonhuman fecal sources using wastewaters and slurries from diverse geographical areas within Europe. Twenty-six parameters, which were later combined to form derived variables for statistical analyses, were obtained by performing methods that were achievable in all the participant laboratories: enumeration of fecal coliform bacteria, enterococci, clostridia, somatic coliphages, F-specific RNA phages, bacteriophages infecting Bacteroides fragilis RYC2056 and Bacteroides thetaiotaomicron GA17, and total and sorbitol-fermenting bifidobacteria; genotyping of F-specific RNA phages; biochemical phenotyping of fecal coliform bacteria and enterococci using miniaturized tests; specific detection of Bifidobacterium adolescentis and Bifidobacterium dentium; and measurement of four fecal sterols. A number of potentially useful source indicators were detected (bacteriophages infecting B. thetaiotaomicron, certain genotypes of F-specific bacteriophages, sorbitol-fermenting bifidobacteria, 24-ethylcoprostanol, and epycoprostanol), although no one source identifier alone provided 100% correct classification of the fecal source. Subsequently, 38 variables (both single and derived) were defined from the measured microbial and chemical parameters in order to find the best subset of variables to develop predictive models using the lowest possible number of measured parameters. To this end, several statistical or machine learning methods were evaluated and provided two successful predictive models based on just two variables, giving 100% correct classification: the ratio of the densities of somatic coliphages and phages infecting Bacteroides thetaiotaomicron to the density of somatic coliphages and the ratio of the densities of fecal coliform bacteria and phages infecting Bacteroides thetaiotaomicron to the density of fecal coliform bacteria. Other models with high rates of correct classification were developed, but in these cases, higher numbers of variables were required.


2022 ◽  
Vol 301 ◽  
pp. 113802
Author(s):  
Javier Méndez ◽  
Cristina García-Aljaro ◽  
Maite Muniesa ◽  
Miriam Pascual-Benito ◽  
Elisenda Ballesté ◽  
...  

2021 ◽  
Author(s):  
Christopher Thurman ◽  
Nikolas S. Zawodny ◽  
Nicole A. Pettingill ◽  
Leonard V. Lopes ◽  
James D. Baeder

2019 ◽  
Vol 67 (3) ◽  
pp. 219-227
Author(s):  
Youhong Xiao ◽  
Qingqing Song ◽  
Shaowei Li ◽  
Guoxue Lv ◽  
Zhenlin Ji

In noise source identification based on the inverse boundary element method (IBEM), the boundary vibration velocity is predicted based on the field pressure through a transfer matrix of the vibration velocity and field pressure established on the Helmholtz integral equation. Because the matrix is often ill-posed, it needs to be regularized before reconstructing the vibration velocity. Two regularization methods and two methods of selecting the regularization parameter are investigated through the simulation analysis of a pulsating sphere. The result of transfer matrix regularization is further verified through the reconstruction of the vibration of an aluminum plate. Additionally, to reduce the large errors at some frequencies in the reconstruction result, increasing the number of measuring points is more effective than reducing the distance between the measurement plane and the sound source.


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