Evidence for limited species diversity of bacteriochlorophyll b-containing purple nonsulfur anoxygenic phototrophs in freshwater habitats

Author(s):  
G Hoogewerf
2020 ◽  
Author(s):  
Natalia Matura ◽  

The study presents the results of lichenological research conducted in 2012–2016, based on my fieldwork carried out in mountain streams in the Polish Western Carpathians, revision of herbarium materials, and published data on lichen species in freshwater habitats in the study area. Field work was performed on 98 research plots divided into three zones related to duration of immersion (294 sampling sites in total). As the result of the work, 94 freshwater lichen species were found (91 based on my field work and/or revision of herbarium material), including 56 aquatic species. For all species, detailed descriptions of morphological and anatomical characters, information on their habitat, occurrence in the study area, worldwide and country distribution, and brief taxonomic notes are given. A key for species identification is also provided. From the present lichenological study, Verrucaria acrotella is reported as new for the Polish Western Carpathians. In total, 30 new species were recorded in particular mountain ranges in the study area. New records of Sarcogyne privigna and Thelidium fontigenum, very rare species in Poland, are given. The streams of the Polish Western Carpathians are characterized by high species diversity in various mountain ranges. The richest lichen biota was observed in streams of the Tatra Mts, where 76 species were found, representing more than 80% of the total number of freshwater lichens known from the Western Carpathians. In the Beskidy Mountains, species diversity in the streams remains within the range of 38–46 species. Two mountain ranges are distinguished by the presence of more species: the Beskid Sądecki Mts (60) and Beskid Żywiecki Mts (57). Thirtysix taxa were noted in the Carpathian foothills. A frequency analysis of lichens shows that very rare species (38 taxa; 40%) and rare species (32; 35%) dominate in the study area. Frequent lichens are the poorest group in the Polish Western Carpathians, accounting for only 4 species (slightly over 4%). Of all the lichens noted in the study area, 34 (~36%) are on the red list of the lichens in Poland. In the case of Carpathian streams, the substrate and the duration of inundation seem to be the most important factors for the occurrence of freshwater lichens. The duration of immersion also affects the species distribution. The submerged zone was the least diverse, in the terms of both number of species and represented families. The only species found there exclusively in the submerged zone were Ionaspis lacustris, Sporodictyon cruentum, Staurothele fissa, Thelidium submethorium, Verrucaria devensis and V. pachyderma. The splash zone provides a habitat transitional between the submerged and riparian zones. Lichens in this zone are constantly exposed to frequent changes between periods of inundation and desiccation. In the splash zone, both species found in the submerged zone as well as those occurring in the riparian zone were found. Species typical for the splash zone included Bacidina inundata, Gyalidea rivularis, Thelidium fontigenum, T. pluvium, Verrucaria humida and V. sublobulata. The most diverse group of lichens was associated with the riparian zone. Many lichens found in this zone are terrestrial lichens commonly found in non-freshwater habitats. They are considered to be rare in aquatic and semi-aquatic habitats but frequent in terrestrial habitats.


2018 ◽  
Author(s):  
Maliheh Mehrshad ◽  
Michaela M. Salcher ◽  
Yusuke Okazaki ◽  
Shin-ichi Nakano ◽  
Karel Šimek ◽  
...  

AbstractBackgroundRepresentatives of the phylum Chloroflexi, though reportedly highly abundant (up to 30% of total prokaryotes) in the extensive deep water habitats of both marine (SAR202) and freshwater (CL500-11), remain uncultivated and uncharacterized. There are few metagenomic studies on marine Chloroflexi representatives, while the pelagic freshwater Chloroflexi community is largely unknown except for a single metagenome-assembled genome of CL500-11.ResultsHere we provide the first extensive examination of the community composition of this cosmopolitan phylum in a range of pelagic habitats (176 datasets) and highlight the impact of salinity and depth on their phylogenomic composition. Reconstructed genomes (53 in total) provide a perspective on the phylogeny, metabolism and distribution of three novel classes and two family-level taxa within the phylum Chloroflexi. We unraveled a remarkable genomic diversity of pelagic freshwater Chloroflexi representatives that thrive not only in the hypolimnion as previously suspected, but also in the epilimnion. Our results suggest that the lake hypolimnion provides a globally stable habitat reflected in lower species diversity among hypolimnion specific CL500-11 and TK10 clusters in distantly related lakes compared to a higher species diversity of the epilimnion specific SL56 cluster. Cell volume analyses show that the CL500-11 are amongst the largest prokaryotic cells in the water column of deep lakes and with a biomass:abundance ratio of two they significantly contribute to the deep lake carbon flow. Metabolic insights indicate participation of JG30-KF-CM66 representatives in the global cobalamin production via cobinamide to cobalamin salvage pathway.ConclusionsExtending phylogenomic comparisons to brackish and marine habitats suggests salinity as the major influencer of the community composition of the deep-dwelling Chloroflexi in marine (SAR202) and freshwater (CL500-11) habitats as both counterparts thrive in intermediate brackish salinity however, freshwater habitats harbor the most phylogenetically diverse community of pelagic Chloroflexi representatives that reside both in epi- and hypolimnion.


Author(s):  
Anna V. Ludikova

The pioneer diatom study of the Early Weichselian (Valdai) sediments in Lake Ladoga basin was performed. The specifics of the diatom assemblages (co-occurrence of ecologically incompatible taxa, poor species diversity, low diatom concentration and selective preservation) suggest that during the Early Weichselian time intense erosion of previously deposited marine Eemian (Mikulino) sediments prevailed, which resulted in re-deposition of marine diatoms. The sedimentation took place in high-energy environments unfavorable for diatom accumulation and preservation.


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