Sequence data from isolated lichen-associated melanized fungi enhance delimitation of two new lineages within Chaetothyriomycetidae

Lichen thalli provide a long-lived and stable habitat for colonization by a wide range of microorganisms. Increased interest in these lichen-associated microbial communities has revealed an impressive diversity of fungi, including several novel lineages which still await formal taxonomic recognition. Among these, members of the Eurotiomycetes and Dothideomycetes usually occur asymptomatically in the lichen thalli, even if they share ancestry with fungi that may be parasitic on their host. Mycelia of the isolates are characterized by melanized cell walls and the fungi display exclusively asexual propagation. Their taxonomic placement requires, therefore, the use of DNA sequence data. Here, we consider recently published sequence data from lichen-associated fungi and characterize and formally describe two new, individually monophyletic lineages at family, genus, and species levels. The Pleostigmataceae fam. nov. and Melanina gen. nov. both comprise rock-inhabiting fungi that associate with epilithic, crust-forming lichens in subalpine habitats. The phylogenetic placement and the monophyly of Pleostigmataceae lack statistical support, but the family was resolved as sister to the order Verrucariales. This family comprises the species Pleostigma alpinum sp. nov., P. frigidum sp. nov., P. jungermannicola, and P. lichenophilum sp. nov. The placement of the genus Melanina is supported as a lineage within the Chaetothyriales. To date, this genus comprises the single species M. gunde-cimermaniae sp. nov. and forms a sister group to a large lineage including Herpotrichiellaceae, Chaetothyriaceae, Cyphellophoraceae, and Trichomeriaceae. The new phylogenetic analysis of the subclass Chaetothyiomycetidae provides new insight into genus and family level delimitation and classification of this ecologically diverse group of fungi.

Contribution to the special issue on reptile cognition: Dealing with the unexpected: the effect of environmental variability on behavioural flexibility in a Mediterranean lizard

Harsh and variable environments have been hypothesized to both drive and constrain the evolution towards higher cognitive abilities and behavioural flexibility. In this study, we compared the cognitive abilities of island and mainland Aegean wall lizards (Podarcis erhardii), which were expected to live in respectively a more variable and a more stable habitat. We used four proxies of behavioural flexibility: a neophobia assay, a problem-solving test and a spatial + reversal learning task. Surprisingly, the two populations did not differ in neophobia or problem-solving. Insular lizards, however, outperformed mainland conspecifics in an initial spatial learning task, but were less successful during the subsequent reversal learning. Our results thus seem to indicate that the effect of environmental variability on cognition is complex, as it may favour some, but not all aspects of behavioural flexibility.

The joint evolution of lifespan and self-fertilisation

ABSTRACTIn Angiosperms, there exists a strong association between mating system and lifespan. Most self-fertilising species are short-lived and most predominant or obligate outcrossers are long-lived. This association is generally explained by the influence of lifespan on the evolution of the mating system, considering lifespan as fixed. Yet, lifespan can itself evolve, and the mating system may as well influence the evolution of lifespan, as is suggested by joint evolutionary shifts of lifespan and mating system between sister species. In this paper, we build modifier models to study the joint evolution of self-fertilisation and lifespan, including both juvenile and adult inbreeding depression. We show that self-fertilisation is expected to promote evolution towards shorter lifespan, and that the range of conditions under which selfing can evolve rapidly shrinks as lifespan increases. We study the effects of inbreeding depression affecting various steps in the life cycle, and discuss how extrinsic mortality conditions are expected to affect evolutionary associations. In particular, we show that selfers may sometimes remain short-lived even in a very stable habitat, as a strategy to avoid the deleterious effects of inbreeding.

Hidden in plain sight - highly abundant and diverse planktonic freshwater Chloroflexi

BackgroundRepresentatives of the phylum Chloroflexi, though reportedly highly abundant (up to 30% of total prokaryotes) in the extensive deep water habitats of both marine (SAR202) and freshwater (CL500-11), remain uncultivated and uncharacterized. There are few metagenomic studies on marine Chloroflexi representatives, while the pelagic freshwater Chloroflexi community is largely unknown except for a single metagenome-assembled genome of CL500-11.ResultsHere we provide the first extensive examination of the community composition of this cosmopolitan phylum in a range of pelagic habitats (176 datasets) and highlight the impact of salinity and depth on their phylogenomic composition. Reconstructed genomes (53 in total) provide a perspective on the phylogeny, metabolism and distribution of three novel classes and two family-level taxa within the phylum Chloroflexi. We unraveled a remarkable genomic diversity of pelagic freshwater Chloroflexi representatives that thrive not only in the hypolimnion as previously suspected, but also in the epilimnion. Our results suggest that the lake hypolimnion provides a globally stable habitat reflected in lower species diversity among hypolimnion specific CL500-11 and TK10 clusters in distantly related lakes compared to a higher species diversity of the epilimnion specific SL56 cluster. Cell volume analyses show that the CL500-11 are amongst the largest prokaryotic cells in the water column of deep lakes and with a biomass:abundance ratio of two they significantly contribute to the deep lake carbon flow. Metabolic insights indicate participation of JG30-KF-CM66 representatives in the global cobalamin production via cobinamide to cobalamin salvage pathway.ConclusionsExtending phylogenomic comparisons to brackish and marine habitats suggests salinity as the major influencer of the community composition of the deep-dwelling Chloroflexi in marine (SAR202) and freshwater (CL500-11) habitats as both counterparts thrive in intermediate brackish salinity however, freshwater habitats harbor the most phylogenetically diverse community of pelagic Chloroflexi representatives that reside both in epi- and hypolimnion.

Ecology of the rare but irruptive Pilliga mouse, Pseudomys pilligaensis. IV. Habitat ecology

We determined preferences of the Pilliga mouse, Pseudomys pilligaensis, for habitat attributes (ground and vegetation cover) through phases of a population irruption, and characterised refuge sites used when environmental conditions were unfavourable. In general, P. pilligaensis preferred areas with substrate dominated by sand and shrubs rather than rock or litter. However, its habitat selection changed with phases of the irruption. In the Increase phase, it showed no strong habitat preferences, perhaps because the abundance of food (seeds) overrode preferences for more stable habitat values. Its sensitivity to habitat variables increased in the Peak phase. In the Low phase, mice preferred ground cover with higher proportions of sand and shrubs, and lower proportions of rock and litter. Regression analyses suggested that sandy substrate is the most important factor for the refuge habitat of P. pilligaensis, perhaps because a sandy surface can support more understorey shrubs which provide seeds and protection from predators, and provides sites for burrows. Judging from areas where P. pilligaensis was caught during the Low phase, water run-on areas could also characterise refuge habitats. However, further studies are needed to define the species’ refuge habitats fully.

Kestabilan Habitat Lamun Ditinjau Dari Komposisi dan Kepadatan Jenis

<em>Seagrasses habitats have both physical and ecological functions that support adjacent waters qualities and its dwelling organisms. There are varies of pressure on seagrass environmental, especially due to people activities that could decrease its function and habitat stabilities. The study aimed to determine about seagrass habitat stabilities from its species composition and/or densities. Line transect-plots and exploration methods were used in five locations of Manokwari coastal waters, that were, Andai, Rendani, Wosi, Briosi, and Tanjung Manggewa. There are five pioneer species (Cymodocea rotundata, Halodule pinifolia, H. uninervis, Syringodium isoetifolium, Halophila ovalis) and 3 climax species (Cymodocea serrulata, Enhalus acoroides, Thalassia hemprichii). The pioneer only found in Andai and Wosi, however both pioneer and climax encountered in three other locations. In Rendani and Tanjung Manggewa higher density of climax species (T. hemprichii) were 617.7 and 828.0 stands m-2, respectively, although in Briosi the higher pioneer (C. rotundata) of 570.7 stands m-2. These conditions showed that seagrass habitat in Rendani and Tanjung Manggewa are more stable compared to Briosi, as well as Andai and Wosi. It concluded that pioneer species found in newly formed habitat or disturbed, on the other hand, climax in more stable habitat.</em>