scholarly journals 15N chemical shift anisotropy in protein structure refinement and comparison with NH residual dipolar couplings

2003 ◽  
Vol 164 (1) ◽  
pp. 171-176 ◽  
Author(s):  
Rebecca S. Lipsitz ◽  
Nico Tjandra
2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Nilamoni Nath ◽  
Juan Carlos Fuentes-Monteverde ◽  
Dawrin Pech-Puch ◽  
Jaime Rodríguez ◽  
Carlos Jiménez ◽  
...  

Abstract 3D molecular structure determination is a challenge for organic compounds or natural products available in minute amounts. Proton/proton and proton/carbon correlations yield the constitution. J couplings and NOEs oftentimes supported by one-bond 1H,13C residual dipolar couplings (RDCs) or by 13C residual chemical shift anisotropies (RCSAs) provide the relative configuration. However, these RDCs or carbon RCSAs rely on 1% natural abundance of 13C preventing their use for compounds available only in quantities of a few 10’s of µgs. By contrast, 1H RCSAs provide similar information on spatial orientation of structural moieties within a molecule, while using the abundant 1H spin. Herein, 1H RCSAs are accurately measured using constrained aligning gels or liquid crystals and applied to the 3D structural determination of molecules with varying complexities. Even more, deuterated alignment media allow the elucidation of the relative configuration of around 35 µg of a briarane compound isolated from Briareum asbestinum.


2017 ◽  
Vol 8 (3) ◽  
pp. 2061-2072 ◽  
Author(s):  
Lars A. Bratholm ◽  
Jan H. Jensen

We show that a QM-based predictor of a protein backbone and CB chemical shifts is of comparable accuracy to empirical chemical shift predictors after chemical shift-based structural refinement that removes small structural errors (errors in chemical shifts shown in red).


2009 ◽  
Vol 131 (3) ◽  
pp. 985-992 ◽  
Author(s):  
Benjamin J. Wylie ◽  
Charles D. Schwieters ◽  
Eric Oldfield ◽  
Chad M. Rienstra

1999 ◽  
Vol 285 (4) ◽  
pp. 1691-1710 ◽  
Author(s):  
Daron M. Standley ◽  
Volker A. Eyrich ◽  
Anthony K. Felts ◽  
Richard A. Friesner ◽  
Ann E. McDermott

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