Geographic distribution and seasonal variation of mitochondrial DNA haplotypes in the aphid Rhopalosiphum padi (Hemiptera: Aphididae)

1997 ◽  
Vol 87 (2) ◽  
pp. 161-167 ◽  
Author(s):  
D. Martinez-Torres ◽  
A. Moya ◽  
P.D.N. Hebert ◽  
J.-C. Simon
Keyword(s):  
Mitochondrial Dna ◽  
Seasonal Variation ◽  
Gene Flow ◽  
Temperature Regime ◽  
Rhopalosiphum Padi ◽  
Nuclear Gene ◽  
Selective Advantage ◽  
Nuclear Markers ◽  
Host Alternation ◽  
Dna Diversity

AbstractThis study examines the spatial and seasonal patterning of mitochondrial DNA diversity in French populations of the bird cherry-oat aphid, Rhopalosiphum padi (Linnaeus), on both its primary and secondary hosts. Our results confirm the presence of two major mitochondrial lineages that are generally associated with the breeding system variation (cyclic and obligate parthenogenesis) shown by this species. The strength of this relationship varies regionally, being most evident in the south and west. Cyclically parthenogenetic populations show no significant regional or seasonal genetic divergence reflecting high levels of gene flow, possibly promoted by their obligate host-alternation. However, obligately parthenogenetic populations show a north-south cline in the distribution of the dominant haplotypes. This pattern might result from a selective advantage of some obligately parthenogenetic lineages under cold temperature regime. Alternatively, this cline might be established by a gradient in the intensity of nuclear gene flow between cyclically and obligately parthenogenetic populations mediated by androcyclic males. The discrimination between these possible explanations will require extending analysis to include hypervariable nuclear markers.

Strong population structure and limited gene flow between Yellow-billed Ducks and Mallards in southern Africa

The Condor ◽  
2019 ◽  
Author(s):  
Joshua I Brown ◽  
Philip Lavretsky ◽  
Graeme S Cumming ◽  
Jeffrey L Peters
Keyword(s):  
Mitochondrial Dna ◽  
Gene Flow ◽  
Southern Africa ◽  
Secondary Contact ◽  
Nuclear Markers ◽  
Nuclear Introns ◽  
Contemporary Gene Flow ◽  
Limited Gene Flow ◽  
Genetic Swamping ◽  
Evolutionary Consequences

AbstractSecondary contact and hybridization between recently diverged taxa have been increasing due to anthropogenic changes to the environment. Determining whether secondary contact leads to gene flow between species is important for understanding both the evolutionary consequences of such events (i.e. genetic swamping, speciation reversal, hybrid speciation) and for establishing proper conservation measures. Mallards (Anas platyrhynchos), which natively have a Holarctic distribution, have been introduced nearly worldwide due to game-farm and domestic pet releases. Their expanding range has resulted in secondary contact and increased incidences of hybridization with many closely related Mallard-like ducks that comprise the Mallard complex. Here, we assay molecular diversity for 19 nuclear introns and the mitochondrial DNA for wild Mallards (n = 50) across their Holarctic range and Yellow-billed Ducks (n = 30–75; Anas undulata) from southern Africa to determine population genetic structure and test for evidence of Mallard introgression into Yellow-billed Ducks. While we found limited support for contemporary gene flow across nuclear markers, we provide evidence from mitochondrial DNA that best supports ancient gene flow between Yellow-billed Ducks and Mallards. Yellow-billed Ducks best fit a single population at nuclear markers but show some location-specific mtDNA structure that suggests recent founder or bottleneck events. Although we find that introgression from Mallards into Yellow-billed Duck is limited, Yellow-billed Duck populations should be monitored to determine if expanding feral Mallard populations in southern Africa are increasing introgression.

scholarly journals Quasi-Mendelian Paternal Inheritance of mitochondrial DNA: A notorious artifact, or anticipated mtDNA behavior?

2019 ◽  
Author(s):  
Sofia Annis ◽  
Zoe Fleischmann ◽  
Mark Khrapko ◽  
Melissa Franco ◽  
Kevin Wasko ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Nuclear Genome ◽  
Nuclear Gene ◽  
Selective Advantage ◽  
Somatic Tissue ◽  
Biparental Inheritance ◽  
Mtdna Copy Number ◽  
Mendelian Segregation ◽  
Paternal Haplotype ◽  
Mtdna Haplotype

AbstractA recent report by Luo et al (2018) in PNAS (DOI:10.1073/pnas.1810946115) presented evidence of biparental inheritance of mitochondrial DNA. The pattern of inheritance, however, resembled that of a nuclear gene. The authors explained this peculiarity with Mendelian segregation of a faulty gatekeeper gene that permits survival of paternal mtDNA in the oocyte. Three other groups (Vissing, 2019; Lutz-Bonengel and Parson, 2019; Salas et al, 2019), however, posited the observation was an artifact of inheritance of mtDNA nuclear pseudogenes (NUMTs), present in the father’s nuclear genome. We present justification that both interpretations are incorrect, but that the original authors did, in fact, observe biparental inheritance of mtDNA. Our alternative model assumes that because of initially low paternal mtDNA copy number these copies are randomly partitioned into nascent cell lineages. The paternal mtDNA haplotype must have a selective advantage, so ‘seeded’ cells will tend to proceed to fixation of the paternal haplotype in the course of development. We use modeling to emulate the dynamics of paternal genomes and predict their mode of inheritance and distribution in somatic tissue. The resulting offspring is a mosaic of cells that are purely maternal or purely paternal – including in the germline. This mosaicism explains the quasi-Mendelian segregation of the paternal mDNA. Our model is based on known aspects of mtDNA biology and explains all of the experimental observations outlined in Luo et. al., including maternal inheritance of the grand-paternal mtDNA.

Mitochondrial DNA diversity and gene flow in Southeast Asian populations of the synchronously flashing firefly, Pteroptyx tener Olivier (Coleoptera: Lampyridae)

2019 ◽  
Vol 54 (2) ◽  
pp. 175-196
Author(s):  
Shawn Cheng ◽  
Kaviarasu Munian ◽  
Tan Sek-Aun ◽  
Mohd Azahari Faidi ◽  
Shah-Fadir Ishak
Keyword(s):  
Mitochondrial Dna ◽  
Gene Flow ◽  
Southeast Asian ◽  
Asian Populations ◽  
Dna Diversity

scholarly journals Prediction of Genetic Contributions and Generation Intervals in Populations With Overlapping Generations Under Selection

Genetics ◽  
1999 ◽  
Vol 151 (3) ◽  
pp. 1197-1210 ◽  
Author(s):  
Piter Bijma ◽  
John A Woolliams
Keyword(s):  
Gene Flow ◽  
Overlapping Generations ◽  
Selective Advantage ◽  
Turnover Time ◽  
Breeding Value ◽  
Age Classes ◽  
Generation Interval ◽  
Young Parents ◽  
Genetic Contributions

Abstract A method to predict long-term genetic contributions of ancestors to future generations is studied in detail for a population with overlapping generations under mass or sib index selection. An existing method provides insight into the mechanisms determining the flow of genes through selected populations, and takes account of selection by modeling the long-term genetic contribution as a linear regression on breeding value. Total genetic contributions of age classes are modeled using a modified gene flow approach and long-term predictions are obtained assuming equilibrium genetic parameters. Generation interval was defined as the time in which genetic contributions sum to unity, which is equal to the turnover time of genes. Accurate predictions of long-term genetic contributions of individual animals, as well as total contributions of age classes were obtained. Due to selection, offspring of young parents had an above-average breeding value. Long-term genetic contributions of youngest age classes were therefore higher than expected from the age class distribution of parents, and generation interval was shorter than the average age of parents at birth of their offspring. Due to an increased selective advantage of offspring of young parents, generation interval decreased with increasing heritability and selection intensity. The method was compared to conventional gene flow and showed more accurate predictions of long-term genetic contributions.

scholarly journals Hierarchical Analysis of Genetic Structure in Native Fire Ant Populations: Results From Three Classes of Molecular Markers

Genetics ◽  
1997 ◽  
Vol 147 (2) ◽  
pp. 643-655 ◽  
Author(s):  
Kenneth G Ross ◽  
Michael J B Krieger ◽  
D DeWayne Shoemaker ◽  
Edward L Vargo ◽  
Laurent Keller
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Solenopsis Invicta ◽  
Large Scale ◽  
Fire Ant ◽  
Nuclear Markers ◽  
Social Forms ◽  
Native Populations ◽  
Nest Level ◽  
Nuclear Differentiation

We describe genetic structure at various scales in native populations of the fire ant Solenopsis invicta using two classes of nuclear markers, allozymes and microsatellites, and markers of the mitochondrial genome. Strong structure was found at the nest level in both the monogyne (single queen) and polygyne (multiple queen) social forms using allozymes. Weak but significant microgeographic structure was detected above the nest level in polygyne populations but not in monogyne populations using both classes of nuclear markers. Pronounced mitochondrial DNA (mtDNA) differentiation was evident also at this level in the polygyne form only. These microgeographic patterns are expected because polygyny in ants is associated with restricted local gene flow due mainly to limited vagility of queens. Weak but significant nuclear differentiation was detected between sympatric social forms, and strong mtDNA differentiation also was found at this level. Thus, queens of each form seem unable to establish themselves in nests of the alternate type, and some degree of assortative mating by form may exist as well. Strong differentiation was found between the two study regions usinga all three sets of markers. Phylogeographic analyses of the mtDNA suggest that recent limitations on gene flow rather than longstanding barriers to dispersal are responsible for this large-scale structure.

scholarly journals Geographic Structure of Mitochondrial and Nuclear Gene Polymorphisms in Australian Green Turtle Populations and Male-Biased Gene Flow

Genetics ◽  
1997 ◽  
Vol 147 (4) ◽  
pp. 1843-1854 ◽  
Author(s):  
Nancy N FitzSimmons ◽  
Craig Moritz ◽  
Colin J Limpus ◽  
Lisa Pope ◽  
Robert Prince
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Green Turtle ◽  
Nuclear Dna ◽  
Nuclear Gene ◽  
Chelonia Mydas ◽  
Single Copy ◽  
Microsatellite Data ◽  
Ecological Data ◽  
Infinite Allele Model

Abstract The genetic structure of green turtle (Chelonia mydas) rookeries located around the Australian coast was assessed by (1) comparing the structure found within and among geographic regions, (2) comparing microsatellite loci vs. restriction fragment length polymorphism analyses of anonymous single copy nuclear DNA (ascnDNA) loci, and (3) comparing the structure found at nuclear DNA markers to that of previously analyzed mitochondrial (mtDNA) control region sequences. Significant genetic structure was observed over all regions at both sets of nuclear markers, though the microsatellite data provided greater resolution in identifying significant genetic differences in pairwise tests between regions. Inferences about population structure and migration rates from the microsatellite data varied depending on whether statistics were based on the stepwise mutation or infinite allele model, with the latter being more congruent with geography. Estimated rates of gene flow were generally higher than expected for nuclear DNA (nDNA) in comparison to mtDNA, and this difference was most pronounced in comparisons between the northern and southern Great Barrier Reef (GBR). The genetic data combined with results from physical tagging studies indicate that the lack of nuclear gene divergence through the GBR is likely due to the migration of sGBR turtles through the courtship area of the nGBR population, rather than male-biased dispersal. This example highlights the value of combining comparative studies of molecular variation with ecological data to infer population processes.

Diagnosing Mitochondrial DNA Diversity: Applications of a Sentinel Gene Approach

2008 ◽  
Vol 66 (4) ◽  
pp. 362-367 ◽  
Author(s):  
Elizabeth L. Clare ◽  
Kevin C. R. Kerr ◽  
Taika E. von Königslöw ◽  
John J. Wilson ◽  
Paul D. N. Hebert
Keyword(s):  
Mitochondrial Dna ◽  
Dna Diversity

Mitochondrial DNA diversity and origins of domestic goats in Southwest China (excluding Tibet)

2011 ◽  
Vol 95 (1) ◽  
pp. 40-47 ◽  
Author(s):  
Yongju Zhao ◽  
Jiahua Zhang ◽  
Erhu Zhao ◽  
Xugang Zhang ◽  
Xiaoyan Liu ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Southwest China ◽  
Dna Diversity

A human mitochondrial transcriptional activator can functionally replace a yeast mitochondrial HMG-box protein both in vivo and in vitro

1993 ◽  
Vol 13 (3) ◽  
pp. 1951-1961
Author(s):  
M A Parisi ◽  
B Xu ◽  
D A Clayton
Keyword(s):  
Transcription Factor ◽  
Mitochondrial Dna ◽  
Nuclear Gene ◽  
Transcriptional Activator ◽  
Yeast Mitochondria ◽  
Yeast Protein ◽  
Mitochondrial Transcription ◽  
Mitochondrial Transcription Factor ◽  
Mitochondrial Transcription Factor A

Human mitochondrial transcription factor A is a 25-kDa protein that binds immediately upstream of the two major mitochondrial promoters, thereby leading to correct and efficient initiation of transcription. Although the nature of yeast mitochondrial promoters is significantly different from that of human promoters, a potential functional homolog of the human transcriptional activator protein has been previously identified in yeast mitochondria. The importance of the yeast protein in yeast mitochondrial DNA function has been shown by inactivation of its nuclear gene (ABF2) in Saccharomyces cerevisiae cells resulting in loss of mitochondrial DNA. We report here that the nuclear gene for human mitochondrial transcription factor A can be stably expressed in yeast cells devoid of the yeast homolog protein. The human protein is imported efficiently into yeast mitochondria, is processed correctly, and rescues the loss-of-mitochondrial DNA phenotype in a yeast abf2 strain, thus functionally substituting for the yeast protein. Both human and yeast proteins affect yeast mitochondrial transcription initiation in vitro, suggesting that the two proteins may have a common role in this fundamental process.

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