scholarly journals Reconstruction of ARNT PAS-B Unfolding Pathways by Steered Molecular Dynamics and Artificial Neural Networks

Author(s):  
Stefano Motta ◽  
Alessandro Pandini ◽  
Arianna Fornili ◽  
Laura Bonati
2020 ◽  
Author(s):  
Karun Kumar Rao ◽  
Yan Yao ◽  
Lars Grabow

There is great interest in solid state lithium electrolytes to replace the flammable organic electrolyte for an all solid state battery. Previous efforts trying to understand the structure-function relationships resulting in high ionic conductivity materials have mainly relied on <i>ab initio</i> molecular dynamics. Such simulations, however, are computationally demanding and cannot be reasonably applied to large systems containing more than a few hundred atoms. Herein, we investigate using artificial neural networks (ANN) to accelerate the calculation of high accuracy atomic forces and energies used during molecular dynamics (MD) simulations, to eliminate the need for costly <i>ab initio </i>force and energy evaluation methods, such as density functional theory (DFT). After carefully training a robust ANN for four and five element systems, we obtain nearly identical lithium ion diffusivities for Li<sub>10</sub>GeP<sub>2</sub>S<sub>12</sub> (LGPS) when benchmarking the ANN-MD results with DFT-MD. To demonstrate the power of the outlined ANN-MD approach we apply it to a doped LGPS system to calculate the effect of concentrations of chlorine on the lithium diffusivity at a resolution that would be unrealistic to model with DFT-MD. We find that ANN-MD simulations can provide the framework to study systems that require a large number of atoms more efficiently while maintaining high accuracy.


2017 ◽  
Vol 8 (10) ◽  
pp. 6924-6935 ◽  
Author(s):  
Michael Gastegger ◽  
Jörg Behler ◽  
Philipp Marquetand

Artificial neural networks are combined with molecular dynamics to simulate molecular infrared spectra including anharmonicities and temperature effects.


2020 ◽  
Author(s):  
Karun Kumar Rao ◽  
Yan Yao ◽  
Lars Grabow

There is great interest in solid state lithium electrolytes to replace the flammable organic electrolyte for an all solid state battery. Previous efforts trying to understand the structure-function relationships resulting in high ionic conductivity materials have mainly relied on <i>ab initio</i> molecular dynamics. Such simulations, however, are computationally demanding and cannot be reasonably applied to large systems containing more than a few hundred atoms. Herein, we investigate using artificial neural networks (ANN) to accelerate the calculation of high accuracy atomic forces and energies used during molecular dynamics (MD) simulations, to eliminate the need for costly <i>ab initio </i>force and energy evaluation methods, such as density functional theory (DFT). After carefully training a robust ANN for four and five element systems, we obtain nearly identical lithium ion diffusivities for Li<sub>10</sub>GeP<sub>2</sub>S<sub>12</sub> (LGPS) when benchmarking the ANN-MD results with DFT-MD. To demonstrate the power of the outlined ANN-MD approach we apply it to a doped LGPS system to calculate the effect of concentrations of chlorine on the lithium diffusivity at a resolution that would be unrealistic to model with DFT-MD. We find that ANN-MD simulations can provide the framework to study systems that require a large number of atoms more efficiently while maintaining high accuracy.


Author(s):  
Kobiljon Kh. Zoidov ◽  
◽  
Svetlana V. Ponomareva ◽  
Daniel I. Serebryansky ◽  
◽  
...  

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