Active Monomeric and Dimeric Forms ofPseudomonas putidaGlyoxalase I:  Evidence for 3D Domain Swapping†

Biochemistry ◽  
1998 ◽  
Vol 37 (29) ◽  
pp. 10345-10353 ◽  
Author(s):  
André P. Saint-Jean ◽  
Kristina R. Phillips ◽  
Donald J. Creighton ◽  
Martin J. Stone
Keyword(s):  
2002 ◽  
Vol 3 (6) ◽  
pp. 629-642 ◽  
Author(s):  
Maria Hakansson ◽  
Sara Linse

2011 ◽  
Vol 101 (2) ◽  
pp. 459-467 ◽  
Author(s):  
Pere Tubert ◽  
Douglas V. Laurents ◽  
Marc Ribó ◽  
Marta Bruix ◽  
Maria Vilanova ◽  
...  

Structure ◽  
2000 ◽  
Vol 8 (10) ◽  
pp. 1095-1103 ◽  
Author(s):  
Chunxu Qu ◽  
Lars Liljas ◽  
Natacha Opalka ◽  
Christophe Brugidou ◽  
Mark Yeager ◽  
...  

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Joshua M. Karchin ◽  
Jeung-Hoi Ha ◽  
Kevin E. Namitz ◽  
Michael S. Cosgrove ◽  
Stewart N. Loh

2013 ◽  
Vol 288 (23) ◽  
pp. 16438-16450 ◽  
Author(s):  
Gustav Östner ◽  
Veronica Lindström ◽  
Per Hjort Christensen ◽  
Maciej Kozak ◽  
Magnus Abrahamson ◽  
...  

The pathophysiological process in amyloid disorders usually involves the transformation of a functional monomeric protein via potentially toxic oligomers into amyloid fibrils. The structure and properties of the intermediary oligomers have been difficult to study due to their instability and dynamic equilibrium with smaller and larger species. In hereditary cystatin C amyloid angiopathy, a cystatin C variant is deposited in arterial walls and cause brain hemorrhage in young adults. In the present investigation, we use redox experiments of monomeric cystatin C, stabilized against domain swapping by an intramolecular disulfide bond, to generate stable oligomers (dimers, trimers, tetramers, decamers, and high molecular weight oligomers). These oligomers were characterized concerning size by gel filtration, polyacrylamide gel electrophoresis, and mass spectrometry, shape by electron and atomic force microscopy, and, function by assays of their capacity to inhibit proteases. The results showed the oligomers to be highly ordered, domain-swapped assemblies of cystatin C and that the oligomers could not build larger oligomers, or fibrils, without domain swapping. The stabilized oligomers were used to induce antibody formation in rabbits. After immunosorption, using immobilized monomeric cystatin C, and elution from columns with immobilized cystatin C oligomers, oligomer-specific antibodies were obtained. These could be used to selectively remove cystatin C dimers from biological fluids containing both dimers and monomers.


2004 ◽  
Vol 101 (38) ◽  
pp. 13786-13791 ◽  
Author(s):  
S. Yang ◽  
S. S. Cho ◽  
Y. Levy ◽  
M. S. Cheung ◽  
H. Levine ◽  
...  
Keyword(s):  

2018 ◽  
Vol 35 (14) ◽  
pp. 2507-2508 ◽  
Author(s):  
Aleix Lafita ◽  
Pengfei Tian ◽  
Robert B Best ◽  
Alex Bateman

Abstract Summary Proteins with highly similar tandem domains have shown an increased propensity for misfolding and aggregation. Several molecular explanations have been put forward, such as swapping of adjacent domains, but there is a lack of computational tools to systematically analyze them. We present the TAndem DOmain Swap Stability predictor (TADOSS), a method to computationally estimate the stability of tandem domain-swapped conformations from the structures of single domains, based on previous coarse-grained simulation studies. The tool is able to discriminate domains susceptible to domain swapping and to identify structural regions with high propensity to form hinge loops. TADOSS is a scalable method and suitable for large scale analyses. Availability and implementation Source code and documentation are freely available under an MIT license on GitHub at https://github.com/lafita/tadoss. Supplementary information Supplementary data are available at Bioinformatics online.


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