An Implementation of the Smooth Particle Mesh Ewald Method on GPU Hardware

Journal of Chemical Theory and Computation ◽

10.1021/ct900275y ◽

2009 ◽

Vol 5 (9) ◽

pp. 2371-2377 ◽

Author(s):

M. J. Harvey ◽

G. De Fabritiis

Keyword(s):

Particle Mesh Ewald ◽

Download Full-text

Corrigendum to “Acceleration of the canonical molecular dynamics simulation by the particle mesh Ewald method combined with the multiple time-step integrator algorithm”

Chemical Physics Letters ◽

10.1016/s0009-2614(99)01408-6 ◽

2000 ◽

Vol 317 (3-5) ◽

pp. 515 ◽

Author(s):

Masaaki Kawata ◽

Masuhiro Mikami

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Multiple Time ◽

Time Step ◽

Particle Mesh Ewald ◽

Multiple Time Step ◽

Download Full-text

A DAFT DL_POLY distributed memory adaptation of the Smoothed Particle Mesh Ewald method

Computer Physics Communications ◽

10.1016/j.cpc.2006.05.001 ◽

2006 ◽

Vol 175 (5) ◽

pp. 323-329 ◽

Author(s):

I.J. Bush ◽

I.T. Todorov ◽

W. Smith

Keyword(s):

Distributed Memory ◽

Particle Mesh Ewald ◽

Ewald Method ◽

Smoothed Particle

Download Full-text

Staggered Mesh Ewald: An Extension of the Smooth Particle-Mesh Ewald Method Adding Great Versatility

Journal of Chemical Theory and Computation ◽

10.1021/ct9001015 ◽

2009 ◽

Vol 5 (9) ◽

pp. 2322-2338 ◽

Author(s):

David S. Cerutti ◽

Robert E. Duke ◽

Thomas A. Darden ◽

Terry P. Lybrand

Keyword(s):

Particle Mesh Ewald ◽

Download Full-text

Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method

Biophysical Journal ◽

10.1016/s0006-3495(97)78884-2 ◽

1997 ◽

Vol 72 (6) ◽

pp. 2395-2397 ◽

Author(s):

O.N. de Souza ◽

R.L. Ornstein

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Particle Mesh Ewald ◽

Ewald Method ◽

Download Full-text

Molecular Dynamics Simulations on Solvated Biomolecular Systems: The Particle Mesh Ewald Method Leads to Stable Trajectories of DNA, RNA, and Proteins

Journal of the American Chemical Society ◽

10.1021/ja00119a045 ◽

1995 ◽

Vol 117 (14) ◽

pp. 4193-4194 ◽

Author(s):

T. E. III Cheatham ◽

J. L. Miller ◽

T. Fox ◽

T. A. Darden ◽

P. A. Kollman

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Biomolecular Systems ◽

Particle Mesh Ewald ◽

Ewald Method ◽

Dynamics Simulations

Download Full-text

Particle mesh Ewald method for three-dimensional systems with two-dimensional periodicity

Chemical Physics Letters ◽

10.1016/s0009-2614(01)00393-1 ◽

2001 ◽

Vol 340 (1-2) ◽

pp. 165-172 ◽

Author(s):

Masaaki Kawata ◽

Umpei Nagashima

Keyword(s):

Three Dimensional ◽

Two Dimensional ◽

Particle Mesh Ewald ◽

Download Full-text

Accuracy and efficiency of the particle mesh Ewald method

The Journal of Chemical Physics ◽

10.1063/1.470043 ◽

1995 ◽

Vol 103 (9) ◽

pp. 3668-3679 ◽

Author(s):

Henrik G. Petersen

Keyword(s):

Particle Mesh Ewald ◽

Download Full-text

A smooth particle mesh Ewald method

The Journal of Chemical Physics ◽

10.1063/1.470117 ◽

1995 ◽

Vol 103 (19) ◽

pp. 8577-8593 ◽

Cited By ~ 11713

Author(s):

Ulrich Essmann ◽

Lalith Perera ◽

Max L. Berkowitz ◽

Tom Darden ◽

Hsing Lee ◽

...

Keyword(s):

Particle Mesh Ewald ◽

Download Full-text

Publisher’s Note: Interacting dyon ensemble and confinement by particle mesh Ewald method [Phys. Rev. D 95 , 076006 (2017)]

Physical Review D ◽

10.1103/physrevd.95.079904 ◽

2017 ◽

Vol 95 (7) ◽

Author(s):

Motahareh Kiamari ◽

Sedigheh Deldar

Keyword(s):

Method Phys ◽

Particle Mesh Ewald ◽

Download Full-text

Computationally efficient canonical molecular dynamics simulations by using a multiple time-step integrator algorithm combined with the particle mesh Ewald method and with the fast multipole method

Journal of Computational Chemistry ◽

10.1002/(sici)1096-987x(200002)21:3<201::aid-jcc4>3.0.co;2-# ◽

2000 ◽

Vol 21 (3) ◽

pp. 201-217 ◽

Author(s):

Masaaki Kawata ◽

Masuhiro Mikami

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Fast Multipole Method ◽

Multiple Time ◽

Computationally Efficient ◽

Time Step ◽

Particle Mesh Ewald ◽

Multiple Time Step ◽

Ewald Method ◽

Dynamics Simulations

Download Full-text