Towards environmental systems biology of Shewanella

James K. Fredrickson; Margaret F. Romine; Alexander S. Beliaev; Jennifer M. Auchtung; Michael E. Driscoll; Timothy S. Gardner; Kenneth H. Nealson; Andrei L. Osterman; Grigoriy Pinchuk; Jennifer L. Reed; Dmitry A. Rodionov; Jorge L. M. Rodrigues; Daad A. Saffarini; Margrethe H. Serres; Alfred M. Spormann; Igor B. Zhulin; James M. Tiedje

doi:10.1038/nrmicro1947

Towards environmental systems biology of Shewanella

Nature Reviews Microbiology ◽

10.1038/nrmicro1947 ◽

2008 ◽

Vol 6 (8) ◽

pp. 592-603 ◽

Cited By ~ 614

Author(s):

James K. Fredrickson ◽

Margaret F. Romine ◽

Alexander S. Beliaev ◽

Jennifer M. Auchtung ◽

Michael E. Driscoll ◽

...

Keyword(s):

Systems Biology ◽

Environmental Systems

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An Environmental Systems Biology Approach to the Study of Asthma

Allergy Frontiers: Future Perspectives ◽

10.1007/978-4-431-99365-0_15 ◽

2010 ◽

pp. 239-252 ◽

Cited By ~ 1

Author(s):

William A. Toscano ◽

Kristen P. Oehlke ◽

Ramzi Kafoury

Keyword(s):

Systems Biology ◽

Environmental Systems

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Environmental Systems Biology Approach to Bioremediation

Advances in Environmental Microbiology - Understanding Terrestrial Microbial Communities ◽

10.1007/978-3-030-10777-2_4 ◽

2019 ◽

pp. 103-127

Author(s):

Terry C. Hazen

Keyword(s):

Systems Biology ◽

Environmental Systems

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Environmental systems biology of cold-tolerant phenotype inSaccharomycesspecies adapted to grow at different temperatures

Molecular Ecology ◽

10.1111/mec.12930 ◽

2014 ◽

Vol 23 (21) ◽

pp. 5241-5257 ◽

Cited By ~ 45

Author(s):

Caroline Mary Paget ◽

Jean-Marc Schwartz ◽

Daniela Delneri

Keyword(s):

Systems Biology ◽

Environmental Systems ◽

Cold Tolerant ◽

Different Temperatures

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Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research

Behavioral and Brain Sciences ◽

10.1017/s0140525x18002911 ◽

2019 ◽

Vol 42 ◽

Author(s):

J. Alfredo Blakeley-Ruiz ◽

Carlee S. McClintock ◽

Ralph Lydic ◽

Helen A. Baghdoyan ◽

James J. Choo ◽

...

Keyword(s):

Systems Biology ◽

High Resolution ◽

Experimental Design ◽

Integrated Systems ◽

Microbiome Research ◽

Constructive Criticism

Abstract The Hooks et al. review of microbiota-gut-brain (MGB) literature provides a constructive criticism of the general approaches encompassing MGB research. This commentary extends their review by: (a) highlighting capabilities of advanced systems-biology “-omics” techniques for microbiome research and (b) recommending that combining these high-resolution techniques with intervention-based experimental design may be the path forward for future MGB research.

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