scholarly journals Deep learning enables cross-modality super-resolution in fluorescence microscopy

2018 ◽  
Vol 16 (1) ◽  
pp. 103-110 ◽  
Author(s):  
Hongda Wang ◽  
Yair Rivenson ◽  
Yiyin Jin ◽  
Zhensong Wei ◽  
Ronald Gao ◽  
...  
2018 ◽  
Author(s):  
Marcel Štefko ◽  
Baptiste Ottino ◽  
Kyle M. Douglass ◽  
Suliana Manley

Super-resolution fluorescence microscopy improves spatial resolution, but this comes at a loss of image throughput and presents unique challenges in identifying optimal acquisition parameters. Microscope automation routines can offset these drawbacks, but thus far have required user inputs that presume a priori knowledge about the sample. Here, we develop a flexible illumination control system for localization microscopy comprised of two interacting components that require no sample-specific inputs: a self-tuning controller and a deep learning molecule density estimator that is accurate over an extended range. This system obviates the need to fine-tune parameters and demonstrates the design of modular illumination control for localization microscopy.


Author(s):  
Hongda Wang ◽  
Yair Rivenson ◽  
Yiyin Jin ◽  
Zhensong Wei ◽  
Ronald Gao ◽  
...  

2019 ◽  
Author(s):  
Hongda Wang ◽  
Yair Rivenson ◽  
Yiyin Jin ◽  
Zhensong Wei ◽  
Ronald Gao ◽  
...  

2018 ◽  
Vol 34 (13) ◽  
pp. i284-i294 ◽  
Author(s):  
Yu Li ◽  
Fan Xu ◽  
Fa Zhang ◽  
Pingyong Xu ◽  
Mingshu Zhang ◽  
...  

2018 ◽  
Author(s):  
Hongda Wang ◽  
Yair Rivenson ◽  
Yiyin Jin ◽  
Zhensong Wei ◽  
Ronald Gao ◽  
...  

AbtsractWe present a deep learning-based method for achieving super-resolution in fluorescence microscopy. This data-driven approach does not require any numerical models of the imaging process or the estimation of a point spread function, and is solely based on training a generative adversarial network, which statistically learns to transform low resolution input images into super-resolved ones. Using this method, we super-resolve wide-field images acquired with low numerical aperture objective lenses, matching the resolution that is acquired using high numerical aperture objectives. We also demonstrate that diffraction-limited confocal microscopy images can be transformed by the same framework into super-resolved fluorescence images, matching the image resolution acquired with a stimulated emission depletion (STED) microscope. The deep network rapidly outputs these super-resolution images, without any iterations or parameter search, and even works for types of samples that it was not trained for.


Author(s):  
Thomas Küstner ◽  
Camila Munoz ◽  
Alina Psenicny ◽  
Aurelien Bustin ◽  
Niccolo Fuin ◽  
...  

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