scholarly journals A multifunnel energy landscape encodes the competing α-helix and β-hairpin conformations for a designed peptide

2020 ◽  
Vol 22 (3) ◽  
pp. 1359-1370 ◽  
Author(s):  
Debayan Chakraborty ◽  
Yassmine Chebaro ◽  
David J. Wales
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
Energy Landscape ◽  
Secondary Structures ◽  
Free Energy Landscape ◽  
Conformational Switching ◽  
Α Helix

The propensities to form different secondary structures are encoded in the multifunnel nature of the underlying free energy landscape, and conformational switching between such structures is a key element of protein folding and aggregation.

scholarly journals Accurate Protein-Folding Transition-Path Statistics from a Simple Free-Energy Landscape

2018 ◽  
Vol 122 (49) ◽  
pp. 11126-11136 ◽  
Author(s):  
William M. Jacobs ◽  
Eugene I. Shakhnovich
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
Energy Landscape ◽  
Free Energy Landscape ◽  
Transition Path

Quantifying the Roughness on the Free Energy Landscape:  Entropic Bottlenecks and Protein Folding Rates

2004 ◽  
Vol 126 (27) ◽  
pp. 8426-8432 ◽  
Author(s):  
Leslie L. Chavez ◽  
José N. Onuchic ◽  
Cecilia Clementi
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
Energy Landscape ◽  
Free Energy Landscape ◽  
Folding Rates

scholarly journals High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape

2016 ◽  
Vol 111 (11) ◽  
pp. 2368-2376 ◽  
Author(s):  
Martin J. Fossat ◽  
Thuy P. Dao ◽  
Kelly Jenkins ◽  
Mariano Dellarole ◽  
Yinshan Yang ◽  
...  
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
High Resolution ◽  
Energy Landscape ◽  
Free Energy Landscape ◽  
Repeat Protein ◽  
High Resolution Mapping ◽  
Resolution Mapping ◽  
Folding Free Energy

Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding

Biochemistry ◽  
2017 ◽  
Vol 56 (31) ◽  
pp. 4053-4063 ◽  
Author(s):  
Pooja Malhotra ◽  
Prashant N. Jethva ◽  
Jayant B. Udgaonkar
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
Energy Landscape ◽  
Free Energy Landscape

scholarly journals Quantifying Nonnative Interactions in the Protein-Folding Free-Energy Landscape

2016 ◽  
Vol 111 (2) ◽  
pp. 287-293 ◽  
Author(s):  
Paulo Ricardo Mouro ◽  
Vinícius de Godoi Contessoto ◽  
Jorge Chahine ◽  
Ronaldo Junio de Oliveira ◽  
Vitor Barbanti Pereira Leite
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
Energy Landscape ◽  
Free Energy Landscape ◽  
Folding Free Energy
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