scholarly journals Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets

2010 ◽  
Vol 9 (3) ◽  
pp. 167-180 ◽  
Author(s):  
Han Suk Kim ◽  
Jürgen P. Schulze ◽  
Angela C. Cone ◽  
Gina E. Sosinsky ◽  
Maryann E. Martone

The design of transfer functions for volume rendering is a non-trivial task. This is particularly true for multi-channel data sets, where multiple data values exist for each voxel, which require multi-dimensional transfer functions. In this article, we propose a new method for multi-dimensional transfer function design. Our new method provides a framework to combine multiple computational approaches and pushes the boundary of gradient-based multidimensional transfer functions to multiple channels, while keeping the dimensionality of transfer functions at a manageable level, that is, a maximum of three dimensions, which can be displayed visually in a straightforward way. Our approach utilizes channel intensity, gradient, curvature and texture properties of each voxel. Applying recently developed nonlinear dimensionality reduction algorithms reduce the high-dimensional data of the domain. In this article, we use Isomap and Locally Linear Embedding as well as a traditional algorithm, Principle Component Analysis. Our results show that these dimensionality reduction algorithms significantly improve the transfer function design process without compromising visualization accuracy. We demonstrate the effectiveness of our new dimensionality reduction algorithms with two volumetric confocal microscopy data sets.

2013 ◽  
Vol 677 ◽  
pp. 436-441 ◽  
Author(s):  
Kang Hua Hui ◽  
Chun Li Li ◽  
Xin Zhong Xu ◽  
Xiao Rong Feng

The locally linear embedding (LLE) algorithm is considered as a powerful method for the problem of nonlinear dimensionality reduction. In this paper, a new method called Self-Regulated LLE is proposed. It achieves to solve the problem of deciding appropriate neighborhood parameter for LLE by finding the local patch which is close to be a linear one. The experiment results show that LLE with self-regulation performs better in most cases than LLE based on different evaluation criteria and spends less time on several data sets.


Author(s):  
Hai Lin

Transfer function design is one of the most important procedures in volume rendering. Transfer function maps, which is a function mapping relationship, data values to display attributes, such as color and opacity. This chapter introduces region growing- based multi-dimensional transfer function design method, which can improve the effect of the multi-dimensional transfer function design, and help the users save the time used in the interactive design and decrease the difficult. In order to use the spatial information as independent variable, we combine spatial information to generate multi-dimensional transfer function. This chapter discusses the GPU-based transfer function lookup method and illumination parameter setting problems. In the last part of this chapter, we discuss the data layout of large scale volume data set and its volume rendering methods.


2015 ◽  
Vol 4 (2) ◽  
pp. 336
Author(s):  
Alaa Najim

<p><span lang="EN-GB">Using dimensionality reduction idea to visualize graph data sets can preserve the properties of the original space and reveal the underlying information shared among data points. Continuity Trustworthy Graph Embedding (CTGE) is new method we have introduced in this paper to improve the faithfulness of the graph visualization. We will use CTGE in graph field to find new understandable representation to be more easy to analyze and study. Several experiments on real graph data sets are applied to test the effectiveness and efficiency of the proposed method, which showed CTGE generates highly faithfulness graph representation when compared its representation with other methods.</span></p>


1978 ◽  
Vol 9 (1) ◽  
pp. 87-112 ◽  
Author(s):  
William Halsey Hutson

The distribution and abundance of planktonic Foraminifera from the Indian Ocean are used to illustrate geographic variations in faunal assemblages in the plankton and on the seabed caused by sedimentary and postdepositional processes and to analyze the effect of these variations on paleoecological reconstruction. Principal components analysis of these data describes the composition and distribution of faunal assemblages in plankton-tow samples, low-dissolution core-top samples, and high-dissolution core-top samples. Factor-comparison analysis describes the relationships among these three sets of assemblages: The species composition of low-dissolution faunal assemblages may be accurately described as a simple linear mixing of plankton assemblages. The geographical distributions of the faunal assemblages in the sediments, however, are often displaced equatorward of their counterparts in the plankton. Dissolution causes complex changes in the composition of faunal assemblages and produces an equatorward displacement of several high-dissolution assemblages relative to their counterparts in low-dissolution sediments. Three transfer functions, or equations, are derived using plankton, low-dissolution, and high-dissolution data. Numerical experiments indicate that transfer functions lose accuracy when applied to discordant data sets: The plankton transfer function often underestimates temperatures in core-top sediments, and the low-dissolution transfer function underestimates temperatures in high-dissolution sediments. These systematic differences in temperature estimates are illustrated by applying the three transfer functions to downcore samples representing conditions 18,000 years ago. Other experiments indicate that these distortions can be reduced by using larger size fractions and calibrating transfer functions with both low- and high-dissolution core-top samples.


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