Dynamic Structure Change due to ATP Hydrolysis in the Motor Domain of Myosin: Molecular Dynamics Simulations

Mapping Intimacies ◽

10.1063/1.2759761 ◽

2007 ◽

Author(s):

Tatsuyuki Kawakubo ◽

Okimasa Okada ◽

Tomoyuki Minami

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Atp Hydrolysis ◽

Dynamic Structure ◽

Structure Change ◽

Motor Domain ◽

Dynamics Simulations

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Dynamic conformational changes due to the ATP hydrolysis in the motor domain of myosin: 10-ns molecular dynamics simulations

Biophysical Chemistry ◽

10.1016/j.bpc.2008.12.014 ◽

2009 ◽

Vol 141 (1) ◽

pp. 75-86 ◽

Author(s):

Tatsuyuki Kawakubo ◽

Okimasa Okada ◽

Tomoyuki Minami

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Conformational Changes ◽

Atp Hydrolysis ◽

Motor Domain ◽

Dynamics Simulations

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3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

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2P201 The structural relaxation of myosin motor domain and nucleotide dissociation : Molecular dynamics simulations

Seibutsu Butsuri ◽

10.2142/biophys.45.s170_1 ◽

2005 ◽

Vol 45 (supplement) ◽

pp. S170

Author(s):

F. Takagi ◽

M. Kikuchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Structural Relaxation ◽

Motor Domain ◽

Myosin Motor ◽

Myosin Motor Domain ◽

Dynamics Simulations

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Reaction Dynamics of ATP Hydrolysis in Actin Determined by ab Initio Molecular Dynamics Simulations

Journal of Chemical Theory and Computation ◽

10.1021/ct3003282 ◽

2012 ◽

Vol 8 (9) ◽

pp. 3373-3383 ◽

Author(s):

Holly Freedman ◽

Teodoro Laino ◽

Alessandro Curioni

Keyword(s):

Molecular Dynamics ◽

Ab Initio ◽

Molecular Dynamics Simulations ◽

Atp Hydrolysis ◽

Reaction Dynamics ◽

Ab Initio Molecular Dynamics ◽

Dynamics Simulations

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2P017 Structure Change Analysis of Deep-sea Fish α-Actin at High Pressure by Molecular Dynamics Simulations(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s84_6 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S84-S85

Author(s):

Nobuhiko Wakai ◽

Kazuyuki Takemura ◽

Takami Morita ◽

Akio Kitao

Keyword(s):

Molecular Dynamics ◽

High Pressure ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Deep Sea ◽

Structure Change ◽

Change Analysis ◽

Biophysical Society ◽

Dynamics Simulations ◽

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Dynamic Structure of a Molecular Liquid S0.5Cl0.5: Ab initio Molecular-Dynamics Simulations

Journal of the Physical Society of Japan ◽

10.7566/jpsj.82.074602 ◽

2013 ◽

Vol 82 (7) ◽

pp. 074602 ◽

Author(s):

Satoshi Ohmura ◽

Hironori Shimakura ◽

Yukinobu Kawakita ◽

Fuyuki Shimojo ◽

Makoto Yao

Keyword(s):

Molecular Dynamics ◽

Ab Initio ◽

Molecular Dynamics Simulations ◽

Dynamic Structure ◽

Ab Initio Molecular Dynamics ◽

Molecular Liquid ◽

Dynamics Simulations

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Dynamic Structure Factors From Lipid Membrane Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.12.1784 ◽

2009 ◽

Vol 96 (3) ◽

pp. 354a ◽

Author(s):

Erik G. Brandt ◽

Olle Edholm

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Membrane ◽

Dynamic Structure ◽

Structure Factors ◽

Dynamics Simulations

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Molecular dynamics simulations of evolved collective motions of atoms in the myosin motor domain upon perturbation of the ATPase pocket

Biophysical Chemistry ◽

10.1016/j.bpc.2004.12.049 ◽

2005 ◽

Vol 115 (1) ◽

pp. 77-85 ◽

Author(s):

Tatsuyuki Kawakubo ◽

Okimasa Okada ◽

Tomoyuki Minami

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Motor Domain ◽

Myosin Motor ◽

Myosin Motor Domain ◽

Collective Motions ◽

Dynamics Simulations

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Dynamic Structure Factors from Lipid Membrane Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.11.044 ◽

2009 ◽

Vol 96 (5) ◽

pp. 1828-1838 ◽

Author(s):

Erik G. Brandt ◽

Olle Edholm

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Membrane ◽

Dynamic Structure ◽

Structure Factors ◽

Dynamics Simulations

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Hierarchical dynamics in allostery following ATP hydrolysis monitored by single molecule FRET measurements and MD simulations

Chemical Science ◽

10.1039/d0sc06134d ◽

2021 ◽

Author(s):

Steffen Wolf ◽

Benedikt Sohmen ◽

Björn Hellenkamp ◽

Johann Thurn ◽

Gerhard Stock ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Single Molecule ◽

Atp Hydrolysis ◽

Md Simulations ◽

Large Protein ◽

Single Molecule Fret ◽

Fluorescence Methods ◽

Dynamics Simulations

We report on a study that combines advanced fluorescence methods with molecular dynamics simulations to cover timescales from nanoseconds to milliseconds for a large protein, the chaperone Hsp90.

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