scholarly journals Genomic Encyclopedia of Bacteria and Archaea (GEBA) VI: learning from type strains

2019 ◽  
Vol 40 (3) ◽  
pp. 125
Author(s):  
William B Whitman ◽  
Hans-Peter Klenk ◽  
David R Arahal ◽  
Rosa Aznar ◽  
George Garrity ◽  
...  
Keyword(s):  
Functional Genomics ◽  
Transcriptome Sequencing ◽  
Department Of Energy ◽  
Joint Genome Institute ◽  
The Us ◽  
Prokaryotic Species ◽  
Type Strains ◽  
Genomic Encyclopedia ◽  
Energy Joint Genome Institute

Type strains of species are one of the most valuable resources in microbiology. During the last decade, the Genomic Encyclopedia of Bacteria and Archaea (GEBA) projects at the US Department of Energy Joint Genome Institute (JGI) and their collaborators have worked towards sequencing the genome of all the type strains of prokaryotic species. A new project GEBA VI extends these efforts to functional genomics, including pangenome and transcriptome sequencing and exometabolite analyses. As part of this project, investigators with interests in specific groups of prokaryotes are invited to submit samples for analysis at JGI.

scholarly journals The Genome Portal of the Department of Energy Joint Genome Institute

2011 ◽  
Vol 40 (D1) ◽  
pp. D26-D32 ◽  
Author(s):  
I. V. Grigoriev ◽  
H. Nordberg ◽  
I. Shabalov ◽  
A. Aerts ◽  
M. Cantor ◽  
...  
Keyword(s):  
Department Of Energy ◽  
Joint Genome Institute ◽  
Energy Joint Genome Institute

A proposal to sequence the amphioxus genome submitted to the joint genome institute of the US department of energy

2003 ◽  
Vol 300B (1) ◽  
pp. 5-22 ◽  
Author(s):  
Jeremy J. Gibson-Brown ◽  
Kazutoyo Osoegawa ◽  
John D. McPherson ◽  
Robert H. Waterston ◽  
Pieter J. de Jong ◽  
...  
Keyword(s):  
Department Of Energy ◽  
Joint Genome Institute ◽  
The Us ◽  
Amphioxus Genome

scholarly journals The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

2013 ◽  
Vol 42 (D1) ◽  
pp. D26-D31 ◽  
Author(s):  
Henrik Nordberg ◽  
Michael Cantor ◽  
Serge Dusheyko ◽  
Susan Hua ◽  
Alexander Poliakov ◽  
...  
Keyword(s):  
Department Of Energy ◽  
Joint Genome Institute ◽  
Energy Joint Genome Institute

scholarly journals PhycoCosm, a comparative algal genomics resource

2020 ◽  
Vol 49 (D1) ◽  
pp. D1004-D1011
Author(s):  
Igor V Grigoriev ◽  
Richard D Hayes ◽  
Sara Calhoun ◽  
Bishoy Kamel ◽  
Alice Wang ◽  
...  
Keyword(s):  
Community Engagement ◽  
Data Exchange ◽  
Department Of Energy ◽  
Omics Data ◽  
Genome Sequences ◽  
Web Based ◽  
Photosynthetic Eukaryotes ◽  
The Us ◽  
Algal Genome ◽  
Energy Joint Genome Institute

Abstract Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all eukaryotic lineages of life and collectively responsible for ∼50% of photosynthesis on Earth. Sequenced algal genomes, critical to understanding their complex biology, are growing in number and require efficient tools for analysis. PhycoCosm (https://phycocosm.jgi.doe.gov) is an algal multi-omics portal, developed by the US Department of Energy Joint Genome Institute to support analysis and distribution of algal genome sequences and other ‘omics’ data. PhycoCosm provides integration of genome sequence and annotation for >100 algal genomes with available multi-omics data and interactive web-based tools to enable algal research in bioenergy and the environment, encouraging community engagement and data exchange, and fostering new sequencing projects that will further these research goals.

scholarly journals Building a custom high-throughput platform at the Joint Genome Institute for DNA construct design and assembly—present and future challenges

2020 ◽  
Vol 5 (1) ◽  
Author(s):  
Ian K Blaby ◽  
Jan-Fang Cheng
Keyword(s):  
Department Of Energy ◽  
Joint Genome Institute ◽  
Biological Engineering ◽  
Iterative Design ◽  
Synthetic Dna ◽  
Crucial Component ◽  
Design Build ◽  
Future Challenges ◽  
Engineering Projects ◽  
Energy Joint Genome Institute

Abstract The rapid design and assembly of synthetic DNA constructs have become a crucial component of biological engineering projects via iterative design–build–test–learn cycles. In this perspective, we provide an overview of the workflows used to generate the thousands of constructs and libraries produced each year at the U.S. Department of Energy Joint Genome Institute. Particular attention is paid to describing pipelines, tools used, types of scientific projects enabled by the platform and challenges faced in further scaling output.

scholarly journals The US Department of Energy Great Lakes Bioenergy Research Center: Midwestern Biomass as a Resource for Renewable Fuels

2010 ◽  
Vol 3 (1) ◽  
pp. 3-5 ◽  
Author(s):  
Steven Slater ◽  
Kenneth Keegstra ◽  
Timothy J. Donohue
Keyword(s):  
Great Lakes ◽  
Department Of Energy ◽  
Research Center ◽  
Renewable Fuels ◽  
The Us

Research needs for coatings on glass. Summary of the US Department of Energy roadmapping workshop

2001 ◽  
Vol 392 (2) ◽  
pp. 155-163 ◽  
Author(s):  
Mark D Allendorf
Keyword(s):  
Department Of Energy ◽  
Research Needs ◽  
The Us
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