A taxonomic appraisal of the Chatham Islands flax (Phormium tenax) using morphological and DNA fingerprint data

2010 ◽  
Vol 23 (5) ◽  
pp. 371 ◽  
Author(s):  
R. D. Smissen ◽  
P. B. Heenan

A range of leaf forms of Phormium tenax J.R.Forst. & G.Forst. can be observed in the wild on the Chatham Island archipelago. At one extreme are plants with more or less upright leaves, similar to those observed in New Zealand P. tenax, and at the other extreme there are plants with floppy leaves. The upright-leaved form is found more or less throughout the archipelago, whereas the floppy-leaved form is concentrated in the southern part of Chatham Island, Pitt Island, and on the other southern islands (e.g. South East and Mangere islands). Analysis of amplified fragment length polymorphism (AFLP) and simple-sequence-repeat (SSR) variation, and comparison with a diverse sampling of New Zealand Phormium suggested that both Chatham Islands forms are indigenous and part of a common gene pool. We found no evidence of hybridism with Phormium introduced from New Zealand. Floppy-leaved forms are therefore linked to typical upright leaved P. tenax through upright-leaved plants with bent tips, and do not require taxonomic recognition. AFLP and SSR data both support the view that a plant collected from Ranui Cove, Auckland Island, is descended from Chatham Islands material, and was most likely introduced there by Ngāti Mutunga and Moriori settlers during the 19th century.

2011 ◽  
Vol 42 (No. 3) ◽  
pp. 87-94 ◽  
Author(s):  
U.K. Posselt ◽  
P. Barre ◽  
G. Brazauskas ◽  
L.B. Turner

Perennial ryegrass (Lolium perenne L.) is the most important grass species used in temperate grassland agriculture. Our objective was to obtain an overview of the genetic relationships between 20 individual genotypes of perennial ryegrass of diverse origins, using amplified fragment length polymorphism (AFLP), inter-simple sequence repeat (ISSR), random amplified polymorphic DNA (RAPD) and two sets of simple sequence repeat (SSR) markers. All 20 individuals were uniquely fingerprinted by all four marker systems and comparisons were made on the basis of 85 markers each. Mean genetic similarities were estimated at 0.31, 0.43, 0.23 and 0.15 for AFLPs, ISSRs, RAPDs and SSRs, respectively. Cophenetic values resulted in good (AFLP and SSR-B = 0.88) to moderately good fits (ISSR = 0.76, RAPD = 0.70, and SSR-A = 0.79). Comparing the four marker systems to each other, AFLP and SSR-A were correlated best (r = 0.57). All other comparisons revealed rather low correlation coefficients in the Mantel Z test. With twice as many markers cophenetic values increased to a very good fit for AFLPs (0.90) and SSRs (0.92).      


2010 ◽  
Vol 135 (6) ◽  
pp. 548-555 ◽  
Author(s):  
Bouchaib Khadari ◽  
Amal Zine El Aabidine ◽  
Cinderella Grout ◽  
Inès Ben Sadok ◽  
Agnès Doligez ◽  
...  

A detailed genomic linkage map of the olive [Olea europaea L. ssp. europaea (2x = 2n = 46)] was constructed with a 147 F1 full-sib ‘Olivière’ × ‘Arbequina’ progeny in a two-way pseudo-test cross-mapping configuration. Based on a logarithm of odds threshold of 6 and a maximum recombination fraction of 0.4, maternal and paternal maps were constructed using 222 makers [178 amplified fragment length polymorphism (AFLP), 37 simple sequence repeat (SSR), seven intersimple sequence repeat (ISSR)] and 219 markers (174 AFLP, 39 SSR, 6 ISSR) markers, respectively. The female map regrouped 36 linkage groups (LGs) defining 2210.2 cM of total map length with an average marker spacing 11.2 cM and a maximum gap of 48.5 cM between adjacent markers. The male map contained 31 LGs and covered a distance of 1966.2 cM with an average and a maximum distance between two adjacent markers of 10.3 and 40.4 cM, respectively. Mean LG size was 61.3 and 63.4 cM in the maternal and paternal maps, respectively. The LGs consisted of two to 17 loci (up to 21 loci in the paternal map) and ranged in length from 2.7 to 182 cM (female map) or from 4.1 to 218.1 cM (paternal map). Markers were distributed throughout the maps without any clustering. The total length of the consensus map was 3823.2 cM containing 436 markers distributed into 42 LGs with a mean distance between two adjacent loci of 8.7 cM. Both parental maps and the consensus maps were compared with previously published olive maps. Although not saturated yet, the present maps offer a promising tool for quantitative trait loci mapping because phenotypic characterization of the cross is currently carried out.


2017 ◽  
Vol 45 (3) ◽  
pp. 216-222 ◽  
Author(s):  
David Chagné ◽  
Amali Thrimawithana ◽  
Deepa Bowatte ◽  
Elena Hilario ◽  
Ross Crowhurst ◽  
...  

2017 ◽  
Vol 5 (4) ◽  
pp. 1700008 ◽  
Author(s):  
Dagmar F. Goeke ◽  
Caroline M. Mitchell ◽  
Claudia Lange ◽  
Gary J. Houliston

2011 ◽  
Vol 62 (2) ◽  
pp. 177 ◽  
Author(s):  
Tadesse Sefera ◽  
Bekele Abebie ◽  
Pooran M. Gaur ◽  
Kebebew Assefa ◽  
Rajeev K. Varshney

The genomic DNA profiles of 48 chickpea cultivars released in nine countries and of historical significance to the chickpea breeding programs at ICRISAT and in Ethiopia were evaluated using 48 simple sequence repeat (SSR) markers. Across the cultivars, a total of 504 alleles representing the 48 SSR loci were detected with frequencies ranging from three to 22 (mean 10.5) alleles per locus. The polymorphism information content (PIC) for the SSR markers varied from 0.37 to 0.91 (mean 0.77). A subset of only three highly informative SSR markers (TA176, TA2, TA180) enabled complete discrimination among all 48 chickpea cultivars tested. Hierarchical neighbour-joining UPGMA cluster analysis based on simple matching dissimilarity matrix resolved the 48 cultivars into two major clusters representing desi and kabuli types. These cluster groupings of the cultivars were consistent with the pedigree information available for the cultivars as to the phenotypic classes of chickpea types. Analysis of the temporal patterns of the SSR diversity by classifying 48 chickpea cultivars into four periods of release revealed increasing tendencies in the overall genetic diversity from 0.42 for the earliest varieties developed in the 1970s to 0.62 for those released in the 1980s, and reached a maximum and equivalent level of 0.72 for the varieties developed in the 1990s and 2000s. Overall, the study ascertained that SSRs provide powerful marker tools in revealing genetic diversity and relationships in chickpeas, thereby proving useful for selection of parents in breeding programs and also for DNA fingerprint identification of cultivars.


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