scholarly journals Pufferfish and new paradigm for comparative genome analysis.

1996 ◽  
Vol 93 (4) ◽  
pp. 1363-1365 ◽  
Author(s):  
B. F. Koop ◽  
J. H. Nadeau
Keyword(s):  
Genome Analysis ◽  
Comparative Genome Analysis ◽  
New Paradigm ◽  
Comparative Genome

Synteny Conservation and Chromosome Rearrangements During Mammalian Evolution

Genetics ◽  
1997 ◽  
Vol 147 (1) ◽  
pp. 289-296 ◽  
Author(s):  
Jason Ehrlich ◽  
David Sankoff ◽  
Joseph H Nadeau
Keyword(s):  
Genome Analysis ◽  
Systematic Errors ◽  
Chromosome Rearrangements ◽  
Mammalian Evolution ◽  
Comparative Genome Analysis ◽  
Reciprocal Translocations ◽  
Comparative Genome ◽  
Strong Selection ◽  
Synteny Conservation

Abstract An important problem in comparative genome analysis has been defining reliable measures of synteny conservation. The published analytical measures of synteny conservation have limitations. Nonindependence of comparisons, conserved and disrupted syntenies that are as yet unidentified, and redundant rearrangements lead to systematic errors that tend to overestimate the degree of conservation. We recently derived methods to estimate the total number of conserved syntenies within the genome, counting both those that have already been described and those that remain to be discovered. With this method, we show that ~65% of the conserved syntenies have already been identified for humans and mice, that rates of synteny disruption vary ~25-fold among mammalian lineages, and that despite strong selection against reciprocal translocations, inter-chromosome rearrangements occurred approximately fourfold more often than inversions and other intra-chromosome rearrangements, at least for lineages leading to humans and mice.

Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors

2017 ◽  
Vol 53 ◽  
pp. 218-226 ◽  
Author(s):  
Soomin Jeon ◽  
Jaehoon Jung ◽  
Kwondo Kim ◽  
DongAhn Yoo ◽  
Chanho Lee ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Analysis ◽  
Genetic Factors ◽  
Comparative Genome Analysis ◽  
Comparative Genome

scholarly journals Complete Genome Sequence of the Giant Virus OBP and Comparative Genome Analysis of the Diverse  KZ-Related Phages

2011 ◽  
Vol 86 (3) ◽  
pp. 1844-1852 ◽  
Author(s):  
A. Cornelissen ◽  
S. C. Hardies ◽  
O. V. Shaburova ◽  
V. N. Krylov ◽  
W. Mattheus ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Giant Virus ◽  
Comparative Genome Analysis ◽  
Comparative Genome

Corrigendum: Comparative genome analysis of three Group A Streptococcus dysgalactiae subsp. equisimilis strains isolated in Japan

2021 ◽  
Vol 70 (8) ◽  
Author(s):  
Haruka Ishihara ◽  
Kohei Ogura ◽  
Van An Nguyen ◽  
Tohru Miyoshi-Akiyama ◽  
Shigefumi Okamoto ◽  
...  
Keyword(s):  
Genome Analysis ◽  
Group A Streptococcus ◽  
Comparative Genome Analysis ◽  
Streptococcus Dysgalactiae ◽  
Comparative Genome ◽  
Group A

Comparative genome analysis with the human genome reveals chicken genes associated with fatness and body weight

2011 ◽  
Vol 42 (6) ◽  
pp. 642-649 ◽  
Author(s):  
T. Twito ◽  
D. Madeleine ◽  
R. Perl-Treves ◽  
J. Hillel ◽  
U. Lavi
Keyword(s):  
Body Weight ◽  
Human Genome ◽  
Genome Analysis ◽  
Comparative Genome Analysis ◽  
Comparative Genome
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