Deciphering Protein Complexes and Protein Interaction Networks by Tandem Affinity Purification and Mass Spectrometry

Molecular & Cellular Proteomics ◽

10.1074/mcp.m200005-mcp200 ◽

2002 ◽

Vol 1 (3) ◽

pp. 204-212 ◽

Author(s):

Anna Shevchenko ◽

Daniel Schaft ◽

Assen Roguev ◽

W. W. M. Pim Pijnappel ◽

A. Francis Stewart ◽

...

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Complexes ◽

Affinity Purification ◽

Tandem Affinity Purification ◽

Protein Interaction Networks ◽

Interaction Networks

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Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry

Molecular & Cellular Proteomics ◽

10.1074/mcp.r110.000265 ◽

2010 ◽

Vol 9 (8) ◽

pp. 1650-1665 ◽

Author(s):

Robyn M. Kaake ◽

Xiaorong Wang ◽

Lan Huang

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Complexes ◽

Affinity Purification ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Quantitative Mass Spectrometry

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Faculty Opinions recommendation of Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718039780.793480524 ◽

2013 ◽

Author(s):

Laura Trinkle-Mulcahy

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Complexes ◽

Affinity Purification ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Quantitative Mass Spectrometry

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From pathways to networks: Connecting dots by establishing protein-protein interaction networks in signaling pathways using affinity purification and mass spectrometry

10.1002/pmic.201400147 ◽

2014 ◽

Vol 15 (2-3) ◽

pp. 188-202 ◽

Author(s):

Xu Li ◽

Wenqi Wang ◽

Junjie Chen

Keyword(s):

Mass Spectrometry ◽

Signaling Pathways ◽

Protein Interaction ◽

Affinity Purification ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Combined proximity labeling and affinity purification−mass spectrometry workflow for mapping and visualizing protein interaction networks

Nature Protocols ◽

10.1038/s41596-020-0365-x ◽

2020 ◽

Vol 15 (10) ◽

pp. 3182-3211 ◽

Author(s):

Xiaonan Liu ◽

Kari Salokas ◽

Rigbe G. Weldatsadik ◽

Lisa Gawriyski ◽

Markku Varjosalo

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Affinity Purification ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Affinity Purification Mass Spectrometry

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Systematic Characterization of the Protein Interaction Network and Protein Complexes in Saccharomyces cerevisiae Using Tandem Affinity Purification and Mass Spectrometry

Methods in Molecular Biology - Yeast Functional Genomics and Proteomics ◽

10.1007/978-1-59745-540-4_11 ◽

2009 ◽

pp. 187-207 ◽

Author(s):

Mohan Babu ◽

Nevan J. Krogan ◽

Donald E. Awrey ◽

Andrew Emili ◽

Jack F. Greenblatt

Keyword(s):

Mass Spectrometry ◽

Saccharomyces Cerevisiae ◽

Protein Interaction ◽

Protein Interaction Network ◽

Protein Complexes ◽

Affinity Purification ◽

Interaction Network ◽

Tandem Affinity Purification

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Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2019.05.007 ◽

2019 ◽

Vol 17 ◽

pp. 805-811 ◽

Author(s):

Kumar Yugandhar ◽

Shagun Gupta ◽

Haiyuan Yu

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2014.2306825 ◽

2014 ◽

Vol 11 (4) ◽

pp. 616-627 ◽

Author(s):

Bin Xu ◽

Jihong Guan

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

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Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis

2013 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2013.6732716 ◽

2013 ◽

Author(s):

Haiying Wang ◽

Huiru Zheng ◽

Francisco Azuaje

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Homogeneity Analysis ◽

Functional Homogeneity

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Identifying Protein Complexes from Protein-protein Interaction Networks Based on Fuzzy Clustering and GO Semantic Information

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2021.3095947 ◽

2021 ◽

pp. 1-1

Author(s):

Xiangyu Pan ◽

Lun Hu ◽

Pengwei Hu ◽

Zhu-Hong You

Keyword(s):

Fuzzy Clustering ◽

Protein Interaction ◽

Semantic Information ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks

Journal of Intelligent & Fuzzy Systems ◽

10.3233/jifs-17026 ◽

2018 ◽

Vol 34 (1) ◽

pp. 93-103 ◽

Author(s):

Buwen Cao ◽

Shuguang Deng ◽

Jiawei Luo ◽

Pingjian Ding ◽

Shulin Wang

Keyword(s):

Protein Interaction ◽

Clustering Algorithm ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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