Effect of Disruption Methods on the Dead-End Microfiltration Behavior of Yeast Suspension

2010 ◽  
Vol 45 (8) ◽  
pp. 1042-1050 ◽  
Author(s):  
Dan Liu ◽  
Raphaëlle Savoire ◽  
Eugène Vorobiev ◽  
Jean-Louis Lanoisellé
Keyword(s):  
Dead End ◽  
2015 ◽  
Vol 112 (44) ◽  
pp. 13467-13472 ◽  
Author(s):  
Danya J. Martell ◽  
Chandra P. Joshi ◽  
Ahmed Gaballa ◽  
Ace George Santiago ◽  
Tai-Yen Chen ◽  
...  

Metalloregulators respond to metal ions to regulate transcription of metal homeostasis genes. MerR-family metalloregulators act on σ70-dependent suboptimal promoters and operate via a unique DNA distortion mechanism in which both the apo and holo forms of the regulators bind tightly to their operator sequence, distorting DNA structure and leading to transcription repression or activation, respectively. It remains unclear how these metalloregulator−DNA interactions are coupled dynamically to RNA polymerase (RNAP) interactions with DNA for transcription regulation. Using single-molecule FRET, we study how the copper efflux regulator (CueR)—a Cu+-responsive MerR-family metalloregulator—modulates RNAP interactions with CueR’s cognate suboptimal promoter PcopA, and how RNAP affects CueR−PcopAinteractions. We find that RNAP can form two noninterconverting complexes at PcopAin the absence of nucleotides: a dead-end complex and an open complex, constituting a branched interaction pathway that is distinct from the linear pathway prevalent for transcription initiation at optimal promoters. Capitalizing on this branched pathway, CueR operates via a “biased sampling” instead of “dynamic equilibrium shifting” mechanism in regulating transcription initiation; it modulates RNAP’s binding–unbinding kinetics, without allowing interconversions between the dead-end and open complexes. Instead, the apo-repressor form reinforces the dominance of the dead-end complex to repress transcription, and the holo-activator form shifts the interactions toward the open complex to activate transcription. RNAP, in turn, locks CueR binding at PcopAinto its specific binding mode, likely helping amplify the differences between apo- and holo-CueR in imposing DNA structural changes. Therefore, RNAP and CueR work synergistically in regulating transcription.


Evolution ◽  
2013 ◽  
Vol 67 (12) ◽  
pp. 3600-3616 ◽  
Author(s):  
Anastasia Gioti ◽  
Jason E. Stajich ◽  
Hanna Johannesson
Keyword(s):  
Dead End ◽  

2012 ◽  
Author(s):  
Wan Ramli Wan Daud

Although ultrafiltration and hyperfiltration have replaced many liquid phase separation equipment, both are still considered as “non–unit operation” processes because the sizing of both equipments could not be calculated using either the equilibrium stage, or the rate–based methods. Previous design methods using the dead–end and complete–mixing models are unsatisfactory because the dead–end model tends to underestimate the membrane area, due to the use of the feed concentration in the driving force, while the complete–mixing model tends to overestimate the membrane area, due to the use of a more concentrated rejection concentration in the driving force. In this paper, cross–flow models for both ultrafiltration and hyperfiltration are developed by considering mass balance at a differential element of the cross–flow module, and then integrating the expression over the whole module to get the module length. Since the modeling is rated–based, the length of both modules could be expressed as the product of the height of a transfer unit (HTU), and the number of transfer unit (NTU). The solution of the integral representing the NTU of ultrafiltration is found to be the difference between two exponential integrals (Ei(x)) while that representing the NTU of hyperfiltration is found to be the difference between two hypergeometric functions. The poles of both solutions represent the flux extinction curves of ultrafiltration and hyperfiltration. The NTU for ultrafiltration is found to depend on three parameters: the rejection R, the recovery S, and the dimensionless gel concentration Cg. For any given Cg and R, the recovery, S, is limited by the corresponding flux extinction curve. The NTU for hyperfiltration is found to depend on four parameters: the rejection R, the recovery S, the polarization β, and the dimensionless applied pressure difference ψ. For any given ψ and R, the recovery, S, is limited by the corresponding flux extinction curve. The NTU for both ultrafiltration and hyperfiltration is found to be generally small and less than unity but increases rapidly to infinity near the poles due to flux extinction. Polarization is found to increase the NTU and hence the length and membrane area of the hollow fiber module for hyperfiltration. Key words: Ultrafiltration; hyperfiltration; reverse osmosis; hollow fiber module design; crossflow model; number of transfer unit; height of a transfer unit


Author(s):  
Sergio Balari ◽  
Guillermo Lorenzo
Keyword(s):  
Dead End ◽  

Sign in / Sign up

Export Citation Format

Share Document