The crustacean zooplankton communities in Lakes Michigan and Huron and the central and eastern basins of Lake Erie have shown substantial, persistent changes since the invasion of the predatory cladoceran Bythotrephes in the mid-1980s. A number of cladoceran species have declined dramatically since the invasion, including Eubosmina coregoni, Holopedium gibberum, Daphnia retrocurva, Daphnia pulicaria, and Leptodora kindti, and overall species richness has decreased as a result. Copepods have been relatively unaffected, with the notable exception of Meso cyclops edax, which has virtually disappeared from the lakes. These species shifts have for the most part been consistent and equally pronounced across all three lakes. Responses of crustacean species to the Bythotrephes invasion do not appear to be solely a consequence of size, and it is likely that other factors, e.g., morphology, vertical distribution, or escape responses, are important determinants of vulnerability to predation. Our results indicate that invertebrate predators in general, and invasive ones in particular, can have pronounced, lasting effects on zooplankton community structure.