Phenotypic plasticity and developmental noise in hybrid and parental clones of Daphnia longispina complex

According to the “temporal hybrid superiority hypothesis”, seasonal variability in environmental factors in temperate lakes gives hybrid clones within the D. longispina complex a temporary fitness advantage, thus allowing long-term, dynamic coexistence of hybrids and maternal taxa. However, the maintenance of hybrids would not require their superiority under any given set of environmental conditions if their average fitness over longer periods surpassed that of more specialized and less flexible parental clones. Phenotypic plasticity and developmental noise of several hybrid and maternal clones of Daphnia (Daphnia galeata, Daphnia hyalina, their hybrids and backcrosses) were compared in a series of laboratory experiments. Changes in depth selection and body size at first reproduction were scored in Daphnia exposed to predator (planktivorous fish) threat, to the presence of filamentous cyanobacteria (Cylindrospermopsis raciborskii), and to the presence of toxic compounds (PCB52 and PCB153). The hybrid clones were found to exhibit the broadest phenotypic plasticity of the studied traits in response to the different stress factors. Developmental noise in depth selection behaviour was the lowest in Daphnia galeata, the highest in Daphnia hyalina, and intermediate in hybrid and backcross clones. This diversity of reaction norms might permit the coexistence of closely related Daphnia clones in the variable and often unpredictable lake environment.

Colony formation in three species of the family Scenedesmaceae (Desmodesmus subspicatus, Scenedesmus acutus, Tetradesmus dimorphus) exposed to sodium dodecyl sulfate and its interference with grazing of Daphnia galeata

By mimicking the info-chemicals emitted by grazers, the common anionic surfactant sodium dodecyl sulfate (SDS) can induce colony formation in the green algal genus Scenedesmus at environmentally relevant concentrations. The morphogenetic effects can hinder the feeding efficiency of grazers, reducing energy flow along the pelagic food chain from Scenedesmus to consumers. Despite this potential ecological risk, few studies exist on whether the SDS-triggered induction of colonies is common in other species of the family Scenedesmaceae. Here, we investigated the effects of SDS on the growth and morphology of three species of Scenedesmaceae (Desmodesmus subspicatus, Scenedesmus acutus, and Tetradesmus dimorphus) and on the clearance rates of Daphnia galeata grazing on the SDS-induced colonies. SDS triggered colony formation in all algal species at concentrations nonlethal to them; however, the induction levels of colony formation were generally lower than for those in the Daphnia culture medium. We also found that the SDS-induced colonial algae reduced D. galeata clearance rates. Our results highlight the potential effect of SDS on the Daphnia–Scenedesmaceae system by evoking the morphological response of Scenedesmaceae at concentrations below those that exert toxicity. Such disruptive effects of pollutants on predator–prey interactions should be considered within the framework of ecological risk assessments.

Hybridization dynamics and extensive introgression in the Daphnia longispina species complex: new insights from a high-quality Daphnia galeata reference genome

Hybridization and introgression are recognized as an important source of variation that influence adaptive processes; both phenomena are frequent in the genus Daphnia, a keystone zooplankton taxon in freshwater ecosystems that comprises several species complexes. To investigate genome-wide consequences of introgression between species, we provide here the first high-quality genome assembly for a member of the Daphnia longispina species complex, Daphnia galeata. We further re-sequenced 49 whole genomes of three species of the complex and their interspecific hybrids both from genotypes sampled in the water column and from single resting eggs extracted from sediment cores. Populations from habitats with diverse ecological conditions offered an opportunity to study the dynamics of hybridization linked to ecological changes and revealed a high prevalence of hybrids. Using phylogenetic and population genomic approaches, we provide first insights into the intra- and interspecific genome-wide variability in this species complex and identify regions of high divergence. Finally, we assess the length of ancestry tracts in hybrids to characterize introgression patterns across the genome. Our analyses uncover a complex history of hybridization and introgression reflecting multiple generations of hybridization and backcrossing in the Daphnia longispina species complex. Overall, this study and the new resources presented here pave the way for a better understanding of ancient and contemporary gene flow in the species complex, and facilitate future studies on resting egg banks accumulating in lake sediment.

Influence of environmental factors onto reproductive characteristics of Daphnia galeata from Lake Baikal

The influence of various factors onto the reproductive characteristics of the cladoceran Daphnia galeata Sars, 1863 Lake Baikal was studied. With an increase in the concentration of available feed, the size of the body, average fertility, the size of the brood and the proportion of egg-bearing females increase. At high temperatures, significantly greater fecundity and the proportion of egg-bearing females were noted; other features did not change significantly with temperature increase. Under the conditions of strong turbulence, the fertility and the proportion of egg-bearing females are lower than under the conditions of low turbulence. The presence of a predator with an increase in the concentration of feed and temperature results in the decrease in the size of crustaceans and in the increase of the proportion of egg-bearing females.

Spontaneous rate of clonal mutations in Daphnia galeata

Mutations are the ultimate source of heritable variation and therefore the fuel for evolution, but direct estimates exist only for few species. We estimated the spontaneous nucleotide mutation rate among clonal generations in the waterflea Daphnia galeata with a short term mutation accumulation approach. Individuals from eighteen mutation accumulation lines over five generations were deep genome sequenced to count de novo mutations that were not present in a pool of F1 individuals, representing the parental genotype. We identified 12 new nucleotide mutations in 90 clonal generational passages. This resulted in an estimated haploid mutation rate of 0.745 x 10-9 (95% c.f. 0.39 x 10-9 − 1.26 x 10-9), which is slightly lower than recent estimates for other Daphnia species. We discuss the implications for the population genetics of Cladocerans.