Discovery of phyto-compounds as novel inhibitors against NDM-1 and VIM-1 protein through virtual screening and molecular modelling

Author(s):  
Bipasa Kar ◽  
Chanakya Nath Kundu ◽  
Sanghamitra Pati ◽  
Debdutta Bhattacharya
2019 ◽  
Vol 16 (4) ◽  
pp. 417-426
Author(s):  
Vimee Raturi ◽  
Kumar Abhishek ◽  
Subhashis Jana ◽  
Subhendu Sekhar Bag ◽  
Vishal Trivedi

Background: Malaria Parasite relies heavily on signal transduction pathways to control growth, the progression of the life cycle and sustaining stress for its survival. Unlike kinases, Plasmodium's phosphatome is one of the smallest and least explored for identifying drug target for clinical intervention. PF14_0660 is a putative protein present on the chromosome 14 of Plasmodium falciparum genome. Methods: Multiple sequence alignment of PF14_0660 with other known protein phosphatase indicate the presence of phosphatase motif with specific residues essential for metal binding, catalysis and providing structural stability. PF14_0660 is a mixed α/β type of protein with several β -sheet and α-helix arranged to form βαβαβα sub-structure. The surface properties of PF14_0660 is conserved with another phosphate of this family, but it profoundly diverges from the host protein tyrosine phosphatase. PF14_0660 was cloned, over-expressed and protein is exhibiting phosphatase activity in a dose-dependent manner. Docking of Heterocyclic compounds from chemical libraries into the PF14_0660 active site found nice fitting of several candidate molecules. Results: Compound PPinh6, PPinh 7 and PPinh 5 are exhibiting antimalarial activity with an IC50 of 1.4 ± 0.2µM, 3.8 ± 0.3 µM and 9.4 ± 0.6&#181M respectively. Compound PPinh 6 and PPinh 7 are inhibiting intracellular PF14_0660 phosphatase activity and killing parasite through the generation of reactive oxygen species. Conclusion: Hence, a combination of molecular modelling, virtual screening and biochemical study allowed us to explore the potentials of PF14_0660 as a drug target to design anti-malarials.


2018 ◽  
Vol 3 (1) ◽  
pp. 27
Author(s):  
Dian Herlinda Octorina Howan

Tujuan dari penelitian ini adalah untuk mencari senyawa pandu inhibitor endositosis dengan menggunakan program Molecular Modelling. Screening dilakukan terhadap kurang lebih 800.000 senyawa yang berasal dari beberapa perusahaan komersil. Dari hasil virtual screening didapatkan 320 hits, dan dari jumlah ini hanya 175 senyawa yang bisa didapatkan untuk diuji keaktifan biologisnya. Uji biologis menunjukkan terdapat 7 senyawa dengan kemampuan inhibisi endositosis yang moderat (IC50 = 50 – 170 µM) sampai kemampuan inhibisi yang baik (IC50 < 50 µM). Senyawa-senyawa tersebut adalah : senyawa 1 (IC50 = 42 ± 4 µM), senyawa 2 (IC50 = 83 ± 8 µM), senyawa 3 (IC50 = 135 ± 58  µM), senyawa 4 (IC50 = 151 ± 18 µM), senyawa 5 (IC50 = 144 ± 18 µM), senyawa 6 (IC50 = 13 ± 4  µM), dan senyawa 7 (IC50 ~ 170 µM).


Biochimie ◽  
2011 ◽  
Vol 93 (8) ◽  
pp. 1280-1287 ◽  
Author(s):  
Roberta Trotta ◽  
Stefano De Tito ◽  
Ilaria Lauri ◽  
Valeria La Pietra ◽  
Luciana Marinelli ◽  
...  

PLoS ONE ◽  
2019 ◽  
Vol 14 (1) ◽  
pp. e0210869 ◽  
Author(s):  
Maywan Hariono ◽  
Sy Bing Choi ◽  
Ros Fatihah Roslim ◽  
Mohamed Sufian Nawi ◽  
Mei Lan Tan ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document