scholarly journals Development of rAAV2-CFTR: History of the First rAAV Vector Product to be Used in Humans

2016 ◽  
Vol 27 (2) ◽  
pp. 49-58 ◽  
Author(s):  
Heather S. Loring ◽  
Mai K. ElMallah ◽  
Terence R. Flotte
2021 ◽  
Vol 47 (6) ◽  
Author(s):  
J. Dölz ◽  
H. Egger ◽  
V. Shashkov

AbstractThe numerical solution of dynamical systems with memory requires the efficient evaluation of Volterra integral operators in an evolutionary manner. After appropriate discretization, the basic problem can be represented as a matrix-vector product with a lower diagonal but densely populated matrix. For typical applications, like fractional diffusion or large-scale dynamical systems with delay, the memory cost for storing the matrix approximations and complete history of the data then becomes prohibitive for an accurate numerical approximation. For Volterra integral operators of convolution type, the fast and oblivious convolution quadrature method of Schädle, Lopez-Fernandez, and Lubich resolves this issue and allows to compute the discretized evaluation with N time steps in $O(N \log N)$ O ( N log N ) complexity and only requires $O(\log N)$ O ( log N ) active memory to store a compressed version of the complete history of the data. We will show that this algorithm can be interpreted as an ${{\mathscr{H}}}$ H -matrix approximation of the underlying integral operator. A further improvement can thus be achieved, in principle, by resorting to ${{\mathscr{H}}}^{2}$ H 2 -matrix compression techniques. Following this idea, we formulate a variant of the ${{\mathscr{H}}}^{2}$ H 2 -matrix-vector product for discretized Volterra integral operators that can be performed in an evolutionary and oblivious manner and requires only O(N) operations and $O(\log N)$ O ( log N ) active memory. In addition to the acceleration, more general asymptotically smooth kernels can be treated and the algorithm does not require a priori knowledge of the number of time steps. The efficiency of the proposed method is demonstrated by application to some typical test problems.


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