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Critical assessment and performance improvement of plant–pathogen protein–protein interaction prediction methods
Briefings in Bioinformatics
◽
10.1093/bib/bbx123
◽
2017
◽
Vol 20
(1)
◽
pp. 274-287
◽
Cited By ~ 12
Author(s):
Shiping Yang
◽
Hong Li
◽
Huaqin He
◽
Yuan Zhou
◽
Ziding Zhang
Keyword(s):
Performance Improvement
◽
Protein Interaction
◽
Plant Pathogen
◽
Critical Assessment
◽
Prediction Methods
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Pathogen Protein
◽
Protein Interaction Prediction
◽
And Performance
Download Full-text
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Cited By
References
Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences
BMC Bioinformatics
◽
10.1186/1471-2105-10-419
◽
2009
◽
Vol 10
(1)
◽
Cited By ~ 35
Author(s):
Yungki Park
Keyword(s):
Protein Interaction
◽
Protein Sequences
◽
Critical Assessment
◽
Prediction Methods
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Homologous Protein
◽
Protein Interaction Prediction
Download Full-text
Evaluation of Physical and Functional Protein-Protein Interaction Prediction Methods for Detecting Biological Pathways
PLoS ONE
◽
10.1371/journal.pone.0054325
◽
2013
◽
Vol 8
(1)
◽
pp. e54325
◽
Cited By ~ 7
Author(s):
Vijaykumar Yogesh Muley
◽
Akash Ranjan
Keyword(s):
Protein Interaction
◽
Biological Pathways
◽
Prediction Methods
◽
Functional Protein
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Protein Interaction Prediction
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Host-Pathogen Protein-Protein Interaction Prediction Using an in silico Model
10.31274/ans_air-180814-224
◽
2016
◽
Author(s):
John C. F. Hsieh
◽
Robert L. Jernigan
◽
Susan J. Lamont
Keyword(s):
Protein Interaction
◽
In Silico
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
In Silico Model
◽
Host Pathogen
◽
Pathogen Protein
◽
Protein Interaction Prediction
Download Full-text
Suitability of Sequence-Based Feature Vector for Classification Algorithm Improves Accuracy of Human Protein-Protein Interaction Prediction: A Red Blood Cell Case Study
Current Bioinformatics
◽
10.2174/1574893610666151026215233
◽
2016
◽
Vol 11
(2)
◽
pp. 291-300
◽
Cited By ~ 2
Author(s):
Afsaneh Maali
◽
Mahmood A. Mahdavi
◽
Reza Gheshlaghi
Keyword(s):
Blood Cell
◽
Protein Interaction
◽
Red Blood Cell
◽
Feature Vector
◽
Classification Algorithm
◽
Human Protein
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Protein Interaction Prediction
Download Full-text
HIV1-Human Protein-Protein Interaction Prediction (HHPPIP) Methodology: An FP-Growth Based Association Rule Mining Approach
Current Bioinformatics
◽
10.2174/157489361004150922150233
◽
2015
◽
Vol 10
(4)
◽
pp. 441-455
Author(s):
R. Ramani
◽
Shomona Jacob
Keyword(s):
Protein Interaction
◽
Association Rule
◽
Association Rule Mining
◽
Human Protein
◽
Rule Mining
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Protein Interaction Prediction
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Protein–Protein Interaction Prediction Based on Spectral Radius and General Regression Neural Network
Journal of Proteome Research
◽
10.1021/acs.jproteome.0c00871
◽
2021
◽
Vol 20
(3)
◽
pp. 1657-1665
Author(s):
Hanxiao Xu
◽
Da Xu
◽
Naiqian Zhang
◽
Yusen Zhang
◽
Rui Gao
Keyword(s):
Neural Network
◽
Spectral Radius
◽
Protein Interaction
◽
General Regression Neural Network
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Protein Interaction Prediction
◽
General Regression
Download Full-text
A Review on Compound-Protein Interaction Prediction Methods: Data, Format, Representation and Model
Computational and Structural Biotechnology Journal
◽
10.1016/j.csbj.2021.03.004
◽
2021
◽
Author(s):
Sangsoo Lim
◽
Yijingxiu Lu
◽
Chang Yun Cho
◽
Inyoung Sung
◽
Jungwoo Kim
◽
...
Keyword(s):
Protein Interaction
◽
Prediction Methods
◽
Data Format
◽
Interaction Prediction
◽
Protein Interaction Prediction
Download Full-text
Protein-Protein Interaction: Prediction, Design, and Modulation
Acta Physico-Chimica Sinica
◽
10.3866/pku.whxb201209172
◽
2012
◽
Vol 28
(10)
◽
pp. 2363-2380
◽
Cited By ~ 2
Author(s):
ZHANG Chang-Sheng
◽
◽
LAI Lu-Hua
◽
◽
Keyword(s):
Protein Interaction
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Protein Interaction Prediction
Download Full-text
Exploring Cost-Sensitive Learning in Domain Based Protein-Protein Interaction Prediction
Advances in Soft Computing - The Sixth International Symposium on Neural Networks (ISNN 2009)
◽
10.1007/978-3-642-01216-7_19
◽
2009
◽
pp. 175-184
Author(s):
Weizhao Guo
◽
Yong Hu
◽
Mei Liu
◽
Jian Yin
◽
Kang Xie
◽
...
Keyword(s):
Protein Interaction
◽
Cost Sensitive Learning
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
Protein Interaction Prediction
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Improving Protein-protein Interaction Prediction by Incorporating 3D Genome Information
10.1007/978-3-030-91415-8_43
◽
2021
◽
pp. 511-520
Author(s):
Zehua Guo
◽
Kai Su
◽
Liangjie Liu
◽
Xianbin Su
◽
Mofan Feng
◽
...
Keyword(s):
Protein Interaction
◽
Interaction Prediction
◽
Protein Protein Interaction
◽
3D Genome
◽
Protein Interaction Prediction
◽
Genome Information
Download Full-text
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