Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

Bioinformatics ◽

10.1093/bioinformatics/13.3.235 ◽

1997 ◽

Vol 13 (3) ◽

pp. 235-238 ◽

Author(s):

Andrew Rambaut ◽

Nicholas C. Grass

Keyword(s):

Monte Carlo Simulation ◽

Monte Carlo ◽

Dna Sequence ◽

Phylogenetic Trees ◽

Sequence Evolution ◽

Dna Sequence Evolution

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PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees

Bioinformatics ◽

10.1093/bioinformatics/13.5.559 ◽

1997 ◽

Vol 13 (5) ◽

pp. 559-560 ◽

Author(s):

Nicholas C. Grassly ◽

Jun Adachj ◽

Andrew Rambaut

Keyword(s):

Monte Carlo Simulation ◽

Monte Carlo ◽

Protein Sequence ◽

Phylogenetic Trees ◽

Sequence Evolution ◽

Protein Sequence Evolution

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A Markov chain Monte Carlo Expectation Maximization Algorithm for Statistical Analysis of DNA Sequence Evolution with Neighbor-Dependent Substitution Rates

Journal of Computational and Graphical Statistics ◽

10.1198/106186008x289010 ◽

2008 ◽

Vol 17 (1) ◽

pp. 138-162 ◽

Author(s):

Asger Hobolth

Keyword(s):

Monte Carlo ◽

Markov Chain ◽

Statistical Analysis ◽

Markov Chain Monte Carlo ◽

Dna Sequence ◽

Expectation Maximization ◽

Expectation Maximization Algorithm ◽

Sequence Evolution ◽

Monte Carlo Expectation Maximization ◽

Dna Sequence Evolution

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A DNA Sequence Evolution Analysis Generalized by Simulation and the Markov Chain Monte Carlo Method Implicates Strand Slippage in a Majority of Insertions and Deletions

Journal of Molecular Evolution ◽

10.1007/s00239-002-2366-5 ◽

2002 ◽

Vol 55 (6) ◽

pp. 706-717 ◽

Author(s):

Manami Nishizawa ◽

Kazuhisa Nishizawa

Keyword(s):

Monte Carlo ◽

Markov Chain ◽

Markov Chain Monte Carlo ◽

Monte Carlo Method ◽

Dna Sequence ◽

Sequence Evolution ◽

Insertions And Deletions ◽

Evolution Analysis ◽

Dna Sequence Evolution

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DNA Sequence Evolution Analysis Based on Prefix Position and Allowable Mismatch

Advances in Applied Mathematics ◽

10.12677/aam.2021.106204 ◽

2021 ◽

Vol 10 (06) ◽

pp. 1937-1944

Author(s):

胜男高

Keyword(s):

Dna Sequence ◽

Sequence Evolution ◽

Evolution Analysis ◽

Dna Sequence Evolution

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Rates of DNA sequence evolution differ between taxonomic groups

Science ◽

10.1126/science.3082006 ◽

1986 ◽

Vol 231 (4744) ◽

pp. 1393-1398 ◽

Author(s):

R. Britten

Keyword(s):

Dna Sequence ◽

Sequence Evolution ◽

Taxonomic Groups ◽

Dna Sequence Evolution

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Mitochondrial DNA Sequence Evolution and Phylogeny of the Atlantic Alcidae, Including the Extinct Great Auk (Pinguinus impennis)

Molecular Biology and Evolution ◽

10.1093/oxfordjournals.molbev.a004206 ◽

2002 ◽

Vol 19 (9) ◽

pp. 1434-1439 ◽

Author(s):

Truls Moum ◽

Ulfur Arnason ◽

Einar Árnason

Keyword(s):

Mitochondrial Dna ◽

Dna Sequence ◽

Sequence Evolution ◽

Mitochondrial Dna Sequence ◽

Dna Sequence Evolution

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PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment

BMC Bioinformatics ◽

10.1186/1471-2105-12-104 ◽

2011 ◽

Vol 12 (1) ◽

Author(s):

Botond Sipos ◽

Tim Massingham ◽

Gregory E Jordan ◽

Nick Goldman

Keyword(s):

Monte Carlo Simulation ◽

Monte Carlo ◽

Statistical Computing ◽

Sequence Evolution ◽

Computing Environment

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Substitution Bias, Weighting of DNA Sequence Evolution, and the Phylogenetic Position of Fea's Viper

Systematic Biology ◽

10.1093/sysbio/42.1.18 ◽

1993 ◽

Vol 42 (1) ◽

pp. 18-31 ◽

Author(s):

A. Knight ◽

D. P. Mindell

Keyword(s):

Dna Sequence ◽

Phylogenetic Position ◽

Sequence Evolution ◽

Substitution Bias ◽

Dna Sequence Evolution

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Rates and patterns of mitochondrial DNA sequence evolution in fringilline finches (fringilla spp.) and the greenfinch (Carduelis chloris)

Molecular Biology and Evolution ◽

10.1093/oxfordjournals.molbev.a025967 ◽

1998 ◽

Vol 15 (6) ◽

pp. 638-646 ◽

Author(s):

H. D. Marshall ◽

A. J. Baker

Keyword(s):

Mitochondrial Dna ◽

Dna Sequence ◽

Sequence Evolution ◽

Carduelis Chloris ◽

Mitochondrial Dna Sequence ◽

Dna Sequence Evolution

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Mixed Model Analysis of DNA Sequence Evolution

10.2307/2532943 ◽

1995 ◽

Vol 51 (2) ◽

pp. 552 ◽

Author(s):

Ziheng Yang ◽

Tianlin Wang

Keyword(s):

Dna Sequence ◽

Mixed Model ◽

Model Analysis ◽

Sequence Evolution ◽

Mixed Model Analysis ◽

Dna Sequence Evolution

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