Principal Component Analysis (PCA) is a classical dimensionality reduction technique that computes a low rank representation of the data. Recent studies have shown how to compute this low rank representation from most of the data, excluding a small amount of outlier data. We show how to convert this problem into graph search, and describe an algorithm that solves this problem optimally by applying a variant of the A* algorithm to search for the outliers. The results obtained by our algorithm are optimal in terms of accuracy, and are shown to be more accurate than results obtained by the current state-of-the- art algorithms which are shown not to be optimal. This comes at the cost of running time, which is typically slower than the current state of the art. We also describe a related variant of the A* algorithm that runs much faster than the optimal variant and produces a solution that is guaranteed to be near the optimal. This variant is shown experimentally to be more accurate than the current state-of-the-art and has a comparable running time.
Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping