Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks

Bioinformatics ◽

10.1093/bioinformatics/btu517 ◽

2014 ◽

Vol 30 (23) ◽

pp. 3419-3420 ◽

Author(s):

C. Winterhalter ◽

R. Nicolle ◽

A. Louis ◽

C. To ◽

F. Radvanyi ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein complex identification through Markov clustering with firefly algorithm on dynamic protein–protein interaction networks

Information Sciences ◽

10.1016/j.ins.2015.09.028 ◽

2016 ◽

Vol 329 ◽

pp. 303-316 ◽

Author(s):

Xiujuan Lei ◽

Fei Wang ◽

Fang-Xiang Wu ◽

Aidong Zhang ◽

Witold Pedrycz

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2013.86 ◽

2013 ◽

Vol 10 (3) ◽

pp. 729-741 ◽

Author(s):

Yijia Zhang ◽

Hongfei Lin ◽

Zhihao Yang ◽

Jian Wang ◽

Yanpeng Li ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Complex Prediction ◽

Protein Protein Interaction Networks

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Inferring protein-protein interaction networks from protein complex data

International Journal of Bioinformatics Research and Applications ◽

10.1504/ijbra.2007.015416 ◽

2007 ◽

Vol 3 (4) ◽

pp. 480 ◽

Author(s):

Shawn Martin ◽

Zisu Mao ◽

Linda S. Chan ◽

Suraiya Rasheed

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Complex Data ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks

BMC Systems Biology ◽

10.1186/1752-0509-4-155 ◽

2010 ◽

Vol 4 (1) ◽

pp. 155 ◽

Author(s):

Sandip Chakraborty ◽

Bratati Kahali ◽

Tapash C Ghosh

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Evolutionary Rates ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein complex prediction for large protein protein interaction networks with the Core&Peel method

BMC Bioinformatics ◽

10.1186/s12859-016-1191-6 ◽

2016 ◽

Vol 17 (S12) ◽

Author(s):

Marco Pellegrini ◽

Miriam Baglioni ◽

Filippo Geraci

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Large Protein ◽

Protein Protein Interaction ◽

The Core ◽

Protein Complex Prediction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Modular Decomposition ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2019.05.007 ◽

2019 ◽

Vol 17 ◽

pp. 805-811 ◽

Author(s):

Kumar Yugandhar ◽

Shagun Gupta ◽

Haiyuan Yu

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Better Link Prediction for Protein-Protein Interaction Networks

2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE) ◽

10.1109/bibe50027.2020.00017 ◽

2020 ◽

Author(s):

Ho Yin Yuen ◽

Jesper Jansson

Keyword(s):

Protein Interaction ◽

Link Prediction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein–protein interaction networks?

10.1002/pmic.200600455 ◽

2007 ◽

Vol 7 (6) ◽

pp. 961-964 ◽

Author(s):

Santiago Schnell ◽

Santo Fortunato ◽

Sourav Roy

Keyword(s):

Protein Interaction ◽

Intrinsic Disorder ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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