Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks

BMC Systems Biology ◽

10.1186/1752-0509-4-155 ◽

2010 ◽

Vol 4 (1) ◽

pp. 155 ◽

Author(s):

Sandip Chakraborty ◽

Bratati Kahali ◽

Tapash C Ghosh

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Evolutionary Rates ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks

Journal of Intelligent & Fuzzy Systems ◽

10.3233/jifs-17026 ◽

2018 ◽

Vol 34 (1) ◽

pp. 93-103 ◽

Author(s):

Buwen Cao ◽

Shuguang Deng ◽

Jiawei Luo ◽

Pingjian Ding ◽

Shulin Wang

Keyword(s):

Protein Interaction ◽

Clustering Algorithm ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Understanding centrality-lethality rule from the distinction of essential party/date hub proteins in yeast protein-protein interaction networks

2012 IEEE Symposium on Robotics and Applications (ISRA) ◽

10.1109/isra.2012.6219227 ◽

2012 ◽

Author(s):

Dong Yun-Yuan ◽

Yang Jun ◽

Liu Qi-Jun ◽

Wang Yong-Xian ◽

Wang Zheng-Hua

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

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Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks

Bioinformatics ◽

10.1093/bioinformatics/btu517 ◽

2014 ◽

Vol 30 (23) ◽

pp. 3419-3420 ◽

Author(s):

C. Winterhalter ◽

R. Nicolle ◽

A. Louis ◽

C. To ◽

F. Radvanyi ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein complex identification through Markov clustering with firefly algorithm on dynamic protein–protein interaction networks

Information Sciences ◽

10.1016/j.ins.2015.09.028 ◽

2016 ◽

Vol 329 ◽

pp. 303-316 ◽

Author(s):

Xiujuan Lei ◽

Fei Wang ◽

Fang-Xiang Wu ◽

Aidong Zhang ◽

Witold Pedrycz

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2013.86 ◽

2013 ◽

Vol 10 (3) ◽

pp. 729-741 ◽

Author(s):

Yijia Zhang ◽

Hongfei Lin ◽

Zhihao Yang ◽

Jian Wang ◽

Yanpeng Li ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Complex Prediction ◽

Protein Protein Interaction Networks

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Functional characterization of hub proteins in weighted yeast protein-protein interaction networks

2011 4th International Conference on Biomedical Engineering and Informatics (BMEI) ◽

10.1109/bmei.2011.6098526 ◽

2011 ◽

Author(s):

Dong Yun-yuan ◽

Liu Qi-jun ◽

Yang Jun ◽

Wang Yong-xian ◽

Wang Zheng-hua

Keyword(s):

Protein Interaction ◽

Functional Characterization ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

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Inferring protein-protein interaction networks from protein complex data

International Journal of Bioinformatics Research and Applications ◽

10.1504/ijbra.2007.015416 ◽

2007 ◽

Vol 3 (4) ◽

pp. 480 ◽

Author(s):

Shawn Martin ◽

Zisu Mao ◽

Linda S. Chan ◽

Suraiya Rasheed

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Complex Data ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein complex prediction for large protein protein interaction networks with the Core&Peel method

BMC Bioinformatics ◽

10.1186/s12859-016-1191-6 ◽

2016 ◽

Vol 17 (S12) ◽

Author(s):

Marco Pellegrini ◽

Miriam Baglioni ◽

Filippo Geraci

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Large Protein ◽

Protein Protein Interaction ◽

The Core ◽

Protein Complex Prediction ◽

Protein Protein Interaction Networks

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MOEPGA: A novel method to detect protein complexes in yeast protein–protein interaction networks based on MultiObjective Evolutionary Programming Genetic Algorithm

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2015.06.006 ◽

2015 ◽

Vol 58 ◽

pp. 173-181 ◽

Author(s):

Buwen Cao ◽

Jiawei Luo ◽

Cheng Liang ◽

Shulin Wang ◽

Dan Song

Keyword(s):

Genetic Algorithm ◽

Protein Interaction ◽

Protein Complexes ◽

Evolutionary Programming ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Novel Method ◽

Protein Protein Interaction Networks

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Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein–protein interaction networks

Molecular BioSystems ◽

10.1039/c4mb00230j ◽

2014 ◽

Vol 10 (9) ◽

pp. 2277 ◽

Author(s):

Cheng Liang ◽

Jiawei Luo ◽

Dan Song

Keyword(s):

Protein Interaction ◽

Significant Contribution ◽

Network Simulation ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Network Motifs ◽

Age Dependency ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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