scholarly journals Variation in piRNA and Transposable Element Content in Strains of Drosophila melanogaster

2014 ◽  
Vol 6 (10) ◽  
pp. 2786-2798 ◽  
Author(s):  
Jimin Song ◽  
Jixia Liu ◽  
Sandra L. Schnakenberg ◽  
Hongseok Ha ◽  
Jinchuan Xing ◽  
...  
Genetics ◽  
1993 ◽  
Vol 135 (4) ◽  
pp. 1063-1076 ◽  
Author(s):  
D Smith ◽  
J Wohlgemuth ◽  
B R Calvi ◽  
I Franklin ◽  
W M Gelbart

Abstract P element enhancer trapping has become an indispensable tool in the analysis of the Drosophila melanogaster genome. However, there is great variation in the mutability of loci by these elements such that some loci are relatively refractory to insertion. We have developed the hobo transposable element for use in enhancer trapping and we describe the results of a hobo enhancer trap screen. In addition, we present evidence that a hobo enhancer trap element has a pattern of insertion into the genome that is different from the distribution of P elements in the available database. Hence, hobo insertion may facilitate access to genes resistant to P element insertion.


1994 ◽  
Vol 63 (2) ◽  
pp. 139-144 ◽  
Author(s):  
Sergey V. Nuzhdin ◽  
Trudy F. C. Mackay

SummaryRates of transposition and excision of the Drosophila melanogaster retrotransposon elements mdg3, 297, Doc, roo and copia were estimated directly, by in situ hybridization analysis of their cytological insertion sites in 31 replicates of a highly inbred line that had accumulated spontaneous mutations for approximately 160generations. Estimated transposition rates of Doc, roo and copia were, respectively, 4·2 × 10−5, 3·1 × 10−3 and 1·3 − 10−3; no transpositions of 297 nor mdg3 were observed. Rates of transposition of copia varied significantly among sublines. Excisions were only observed for roo elements, at a rate of 9·0 × 10−6 per element per generation. Copy number averaged over these element families increased 5·9 %; therefore, in these lines the magnitude of the forces opposing transposable element multiplication were weaker than transposition rates.


Genetics ◽  
2001 ◽  
Vol 159 (3) ◽  
pp. 1045-1057 ◽  
Author(s):  
Kenneth Weber ◽  
Robert Eisman ◽  
Shawn Higgins ◽  
Lisa Morey ◽  
April Patty ◽  
...  

AbstractGenetic effects on an index of wing shape on chromosome 2 of Drosophila melanogaster were mapped using isogenic recombinants with transposable element markers. At least 10 genes with small additive effects are dispersed evenly along the chromosome. Many interactions exist, with only small net effects in homozygous recombinants and little effect on phenotypic variance. Heterozygous chromosome segments show almost no dominance. Pleiotropic effects on leg shape are only minor. At first view, wing shape genes form a rather homogeneous class, but certain complexities remain unresolved.


1996 ◽  
Vol 15 (12) ◽  
pp. 3174-3181 ◽  
Author(s):  
A. Udomkit ◽  
S. Forbes ◽  
C. McLean ◽  
I. Arkhipova ◽  
D. J. Finnegan

Gene ◽  
2005 ◽  
Vol 357 (2) ◽  
pp. 122-128 ◽  
Author(s):  
Renè Massimiliano Marsano ◽  
Ruggiero Caizzi ◽  
Roberta Moschetti ◽  
Nikolaj Junakovic

2001 ◽  
Vol 265 (3) ◽  
pp. 489-496 ◽  
Author(s):  
M. Tudor ◽  
A.J. Davis ◽  
M. Feldman ◽  
M. Grammatikaki ◽  
K. O'Hare

Genetics ◽  
1988 ◽  
Vol 119 (4) ◽  
pp. 889-902
Author(s):  
I A Boussy ◽  
M J Healy ◽  
J G Oakeshott ◽  
M G Kidwell

Abstract The latitudinal cline in P-M gonadal dysgenesis potential in eastern Australia has been shown to comprise three regions which are, from north to south respectively, P, Q, and M, with the P-to-Q and Q-to-M transitions occurring over relatively short distances. The P element complements of 30 lines from different regions of the cline were determined by molecular techniques. The total amount of P element-hybridizing DNA was high in all lines, and it did not correlate in any obvious way with the P-M phenotypes of individual lines. The number of potentially full-sized P elements per genome was high in lines from the P regions, but variable or low among lines from the Q and M regions, and thus declined overall from north to south. A particular P element deletion-derivative, the KP element, occurred in all the tested lines. The number of KP elements was low in lines from the P region, much higher in lines from the Q region, and highest among lines from the M region, thus forming a cline reciprocal to that of the full-sized P elements. Another transposable element, hobo, which has been described as causing dysgenic traits similar to those of P-M hybrid dysgenesis, was shown to be present in all lines and to vary among them in number, but not in any latitudinal pattern. The P-M cline in gonadal dysgenesis potential can be inferred to be based on underlying clinal patterns of genomic P element complements. P activity of a line was positively correlated with the number of full-sized P elements in the line, and negatively correlated with the number of KP elements. Among Q and M lines, regulatory ability was not correlated with numbers of KP elements.


Gene ◽  
2008 ◽  
Vol 425 (1-2) ◽  
pp. 64-68 ◽  
Author(s):  
Akihiro Urasaki ◽  
Taro Mito ◽  
Sumihare Noji ◽  
Ryu Ueda ◽  
Koichi Kawakami

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