Importance of Exposed Aromatic Residues in Chitinase B from Serratia marcescens 2170 for Crystalline Chitin Hydrolysis

2004 ◽  
Vol 136 (2) ◽  
pp. 163-168 ◽  
Author(s):  
F. Katouno
2003 ◽  
Vol 185 (6) ◽  
pp. 1776-1782 ◽  
Author(s):  
Taku Uchiyama ◽  
Ryousuke Kaneko ◽  
Junko Yamaguchi ◽  
Akane Inoue ◽  
Takahiro Yanagida ◽  
...  

ABSTRACT The chiR gene of Serratia marcescens 2170, encoding a LysR-type transcriptional activator, was identified previously as an essential factor for expression of chitinases and a chitin-binding protein, CBP21. To identify other genes that are essential for chitinase production, transposon mutagenesis with mini-Tn5Km1 was carried out, and 25 mutants that were unable to produce chitinases and CBP21 were obtained. Analysis of the mutated gene of one of the mutants, N22, revealed the presence of a pts operon in this bacterium, and a mutation was found in ptsI in the operon. In addition to its inability to produce chitinase, N22 did not grow well on N-acetyl-d-glucosamine (GlcNAc), (GlcNAc)2, and some other carbon sources, most of which were phosphotransferase system (PTS) sugars. Thus, the inability to produce chitinase was assumed to be caused by the defect in uptake of (GlcNAc)2 via the PTS, considering that (GlcNAc)2 is the minimal substrate for chitinase induction and the major product of chitin hydrolysis by chitinases of this bacterium. To confirm this assumption, the chb operon, encoding the (GlcNAc)2-specific enzyme II permease, was cloned by reference to its Escherichia coli counterpart, and the Serratia chb operon was shown to comprise chbB, chbC, bglA, chbR, and chbG. Disruption of chbC drastically reduced production of chitinases and CBP21 and impaired growth on colloidal chitin. These results indicate that uptake of (GlcNAc)2 is mediated by the PTS and that the (GlcNAc)2-specific enzyme II permease constitutes its major pathway. Since (GlcNAc)2 uptake is essential for induction of chitinases and CBP21 production, (GlcNAc)2 appears to be the key molecule in recognition and utilization of chitin by S. marcescens.


2003 ◽  
Vol 376 (1) ◽  
pp. 237-244 ◽  
Author(s):  
Takeshi WATANABE ◽  
Yumiko ARIGA ◽  
Urara SATO ◽  
Tadayuki TORATANI ◽  
Masayuki HASHIMOTO ◽  
...  

Bacillus circulans chitinase A1 (ChiA1) has a deep substrate-binding cleft on top of its (β/α)8-barrel catalytic domain and an interaction between the aromatic residues in this cleft and bound oligosaccharide has been suggested. To study the roles of these aromatic residues, especially in crystalline-chitin hydrolysis, site-directed mutagenesis of these residues was carried out. Y56A and W53A mutations at subsites −5 and −3, respectively, selectively decreased the hydrolysing activity against highly crystalline β-chitin. W164A and W285A mutations at subsites +1 and +2, respectively, decreased the hydrolysing activity against crystalline β-chitin and colloidal chitin, but enhanced the activities against soluble substrates. These mutations increased the Km-value when reduced (GlcNAc)5 (where GlcNAc is N-acetylglucosamine) was used as the substrate, but decreased substrate inhibition observed with wild-type ChiA1 at higher concentrations of this substrate. In contrast with the selective effect of the other mutations, mutations of W433 and Y279 at subsite −1 decreased the hydrolysing activity drastically against all substrates and reduced the kcat-value, measured with 4-methylumbelliferyl chitotrioside to 0.022% and 0.59% respectively. From these observations, it was concluded that residues Y56 and W53 are only essential for crystalline-chitin hydrolysis. W164 and W285 are very important for crystalline-chitin hydrolysis and also participate in hydrolysis of other substrates. W433 and Y279 are both essential for catalytic reaction as predicted from the structure.


2001 ◽  
Vol 276 (44) ◽  
pp. 41343-41349 ◽  
Author(s):  
Taku Uchiyama ◽  
Fuminori Katouno ◽  
Naoki Nikaidou ◽  
Takamasa Nonaka ◽  
Junji Sugiyama ◽  
...  

2005 ◽  
Vol 388 (3) ◽  
pp. 851-856 ◽  
Author(s):  
Eva-Lena HULT ◽  
Fuminori KATOUNO ◽  
Taku UCHIYAMA ◽  
Takeshi WATANABE ◽  
Junji SUGIYAMA

β-Chitin microfibrils were treated with ChiA and ChiB (chitinases A and B respectively) from Serratia marcescens 2170. The β-chitin microfibrils were shortened, and the tips appeared narrowed and sharpened at both ends, after either consecutive or simultaneous degradation by ChiA and ChiB. Increased production of reducing sugars by simultaneous degradation (by ChiA and ChiB) of β-chitin, but not of glycol chitin, suggests synergistic interactions between the two enzymes. A combined analysis using the tilt microdiffraction method to determine the crystallographic axes, together with the biotin–streptavidin–gold-labelling method specific to the reducing ends, was used to investigate the polarity of the degraded β-chitin microcrystals. The digestion of the β-chitin fibrils by ChiA occurred from the reducing end to the nonreducing end, whereas digestion by ChiB occurred from the non-reducing end to the reducing end. The results are in agreement with the previously determined three-dimensional structures of these enzymes.


1968 ◽  
Vol 121 (2) ◽  
pp. 145-150 ◽  
Author(s):  
W. H. Dodson
Keyword(s):  

2018 ◽  
Vol 7 (3) ◽  
pp. 108-109
Author(s):  
Javier Bustamante Odriozola ◽  
Álvaro Pérez Martín ◽  
Romina Verónica Quintana ◽  
María José Agüeros Fernández ◽  
Daniel Martínez Revuelta ◽  
...  
Keyword(s):  

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