A theory of pattern formation for reaction–diffusion systems on temporal networks

Author(s):  
Robert A. Van Gorder

Networks have become ubiquitous in the modern scientific literature, with recent work directed at understanding ‘temporal networks’—those networks having structure or topology which evolves over time. One area of active interest is pattern formation from reaction–diffusion systems, which themselves evolve over temporal networks. We derive analytical conditions for the onset of diffusive spatial and spatio-temporal pattern formation on undirected temporal networks through the Turing and Benjamin–Feir mechanisms, with the resulting pattern selection process depending strongly on the evolution of both global diffusion rates and the local structure of the underlying network. Both instability criteria are then extended to the case where the reaction–diffusion system is non-autonomous, which allows us to study pattern formation from time-varying base states. The theory we present is illustrated through a variety of numerical simulations which highlight the role of the time evolution of network topology, diffusion mechanisms and non-autonomous reaction kinetics on pattern formation or suppression. A fundamental finding is that Turing and Benjamin–Feir instabilities are generically transient rather than eternal, with dynamics on temporal networks able to transition between distinct patterns or spatio-temporal states. One may exploit this feature to generate new patterns, or even suppress undesirable patterns, over a given time interval.

Author(s):  
Robert A. Van Gorder

The Turing instability is one of the most commonly studied mechanisms leading to pattern formation in reaction–diffusion systems, yet there are still many open questions on the applicability of the Turing mechanism. Although experiments on pattern formation using chemical systems have shown that temperature differences play a role in pattern formation, there is far less theoretical work concerning the interplay between temperature and spatial instabilities. We consider a thermodynamically extended reaction–diffusion system, consisting of a pair of reaction–diffusion equations coupled to an energy equation for temperature, and use this to obtain a natural extension of the Turing instability accounting for temperature. We show that thermal contributions can restrict or enlarge the set of unstable modes possible under the instability, and in some cases may be used to completely shift the set of unstable modes, strongly modifying emergent Turing patterns. Spatial heterogeneity plays a role under several experimentally feasible configurations, and we give particular consideration to scenarios involving thermal gradients, thermodynamics of chemicals transported within a flow, and thermodiffusion. Control of Turing patterns is also an area of active interest, and we also demonstrate how patterns can be modified using time-dependent control of the boundary temperature.


Author(s):  
Houye Liu ◽  
Weiming Wang

Amplitude equation may be used to study pattern formatio. In this chapter, we establish a new mechanical algorithm AE_Hopf for calculating the amplitude equation near Hopf bifurcation based on the method of normal form approach in Maple. The normal form approach needs a large number of variables and intricate calculations. As a result, deriving the amplitude equation from diffusion-reaction is a difficult task. Making use of our mechanical algorithm, we derived the amplitude equations from several biology and physics models. The results indicate that the algorithm is easy to apply and effective. This algorithm may be useful for learning the dynamics of pattern formation of reaction-diffusion systems in future studies.


Author(s):  
Robert A. Van Gorder

The Turing and Benjamin–Feir instabilities are two of the primary instability mechanisms useful for studying the transition from homogeneous states to heterogeneous spatial or spatio-temporal states in reaction–diffusion systems. We consider the case when the underlying reaction–diffusion system is non-autonomous or has a base state which varies in time, as in this case standard approaches, which rely on temporal eigenvalues, break down. We are able to establish respective criteria for the onset of each instability using comparison principles, obtaining inequalities which involve the in general time-dependent model parameters and their time derivatives. In the autonomous limit where the base state is constant in time, our results exactly recover the respective Turing and Benjamin–Feir conditions known in the literature. Our results make the Turing and Benjamin–Feir analysis amenable for a wide collection of applications, and allow one to better understand instabilities emergent due to a variety of non-autonomous mechanisms, including time-varying diffusion coefficients, time-varying reaction rates, time-dependent transitions between reaction kinetics and base states which change in time (such as heteroclinic connections between unique steady states, or limit cycles), to name a few examples.


Sign in / Sign up

Export Citation Format

Share Document