scholarly journals Evidence for recombination in Crimean-Congo hemorrhagic fever virus

2005 ◽  
Vol 86 (8) ◽  
pp. 2333-2338 ◽  
Author(s):  
Alexander N. Lukashev

Crimean-Congo hemorrhagic fever (CCHF) virus has attracted considerable attention recently and a number of phylogenetic studies have been published, based mostly on partial sequences of S and M RNA segments. In this study, available full-length S, M and L segment sequences of CCHF virus were checked for recombination. Similarity plots and bootscan analysis of the S segment suggested multiple recombination events between southern European, Asian and African CCHF virus strains, with additional evidence provided by phylogenetic trees, the hidden Markov model and probabilistic divergence measures methods. No unambiguous signs of recombination were observed for M and L segments; however, the results did not exclude the possibility of this. These findings, coupled with a recent report on reassortment in CCHF virus, suggest caution when assessing CCHF virus phylogeny based on short sequence fragments.

2005 ◽  
Vol 151 (3) ◽  
pp. 465-475 ◽  
Author(s):  
J. D. Meissner ◽  
S. S. Seregin ◽  
S. V. Seregin ◽  
N. V. Yakimenko ◽  
O. I. Vyshemirskii ◽  
...  

Virology ◽  
2004 ◽  
Vol 321 (1) ◽  
pp. 23-28 ◽  
Author(s):  
Erin Kinsella ◽  
Sandra G Martin ◽  
Allen Grolla ◽  
Markus Czub ◽  
Heinz Feldmann ◽  
...  

2020 ◽  
Vol 14 (8) ◽  
pp. e0008637 ◽  
Author(s):  
Robert W. Cross ◽  
Abhishek N. Prasad ◽  
Viktoriya Borisevich ◽  
Joan B. Geisbert ◽  
Krystle N. Agans ◽  
...  

2005 ◽  
Vol 78 (2) ◽  
pp. 223-228 ◽  
Author(s):  
John D. Meissner ◽  
Sergei S. Seregin ◽  
Sergei V. Seregin ◽  
Oleg I. Vyshemirskii ◽  
Evgeny I. Samokhvalov ◽  
...  

2015 ◽  
Vol 9 (12) ◽  
pp. e0004259 ◽  
Author(s):  
Marko Zivcec ◽  
Maureen G. Metcalfe ◽  
César G. Albariño ◽  
Lisa W. Guerrero ◽  
Scott D. Pegan ◽  
...  

Heliyon ◽  
2017 ◽  
Vol 3 (11) ◽  
pp. e00439 ◽  
Author(s):  
Nariman Shahhosseini ◽  
Ahmad Jafarbekloo ◽  
Zakkyeh Telmadarraiy ◽  
Sadegh Chinikar ◽  
Ali Haeri ◽  
...  

2018 ◽  
Vol 11 (3) ◽  
Author(s):  
Faezeh Faghihi ◽  
Zakkyeh Telmadarraiy ◽  
Sadegh Chinikar ◽  
Norbert Nowotny ◽  
Anthony R. Fooks ◽  
...  

2004 ◽  
Vol 149 (11) ◽  
pp. 2199-2213 ◽  
Author(s):  
J. H. Kuhn ◽  
S. V. Seregin ◽  
S. P. Morzunov ◽  
I. D. Petrova ◽  
O. I. Vyshemirskii ◽  
...  

2002 ◽  
Vol 76 (14) ◽  
pp. 7263-7275 ◽  
Author(s):  
Angela J. Sanchez ◽  
Martin J. Vincent ◽  
Stuart T. Nichol

ABSTRACT Crimean-Congo hemorrhagic fever (CCHF) virus is the cause of an important tick-borne disease of humans throughout regions of Africa, Europe, and Asia. Like other members of the genus Nairovirus, family Bunyaviridae, the CCHF virus M genome RNA segment encodes the virus glycoproteins. Sequence analysis of the CCHF virus (Matin strain) M RNA segment revealed one major open reading frame that potentially encodes a precursor polyprotein 1,689 amino acids (aa) in length. Comparison of the deduced amino acid sequences of the M-encoded polyproteins of Nigerian, Pakistani, and Chinese CCHF virus strains revealed two distinct protein regions. The carboxyl-terminal 1,441 aa are relatively highly conserved (up to 8.4% identity difference), whereas the amino-terminal 243 to 248 aa are highly variable (up to 56.4% identity difference) and have mucin-like features, including a high serine, threonine, and proline content (up to 47.3%) and a potential for extensive O-glycosylation. Analysis of released virus revealed two major structural glycoproteins, G2 (37 kDa) and G1 (75 kDa). Virus protein analysis by various techniques, including pulse-chase analysis and/or reactivity with CCHF virus-specific polyclonal and antipeptide antibodies, demonstrated that the 140-kDa (which contains the mucin-like region) and 85-kDa nonstructural proteins are the precursors of the mature G2 and G1 proteins, respectively. The amino termini of the CCHF virus (Matin strain) G2 and G1 proteins were established by microsequencing to be equivalent to aa 525 and 1046, respectively, of the encoded polyprotein precursor. The tetrapeptides RRLL and RKPL are immediately upstream of the cleavage site for mature G2 and G1, respectively. These are completely conserved among the predicted polyprotein sequences of all the CCHF virus strains and closely resemble the tetrapeptides that represent the major cleavage recognition sites present in the glycoprotein precursors of arenaviruses, such as Lassa fever virus (RRLL) and Pichinde virus (RKLL). These results strongly suggest that CCHF viruses (and other members of the genus Nairovirus) likely utilize the subtilase SKI-1/S1P-like cellular proteases for the major glycoprotein precursor cleavage events, as has recently been demonstrated for the arenaviruses.


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