scholarly journals Inferring the COVID-19 IFR with a simple Bayesian evidence synthesis of seroprevalence study data and imprecise mortality data

Author(s):  
Harlan Campbell ◽  
Paul Gustafson

Estimating the COVID-19 infection fatality rate (IFR) has proven to be particularly challenging --and rather controversial-- due to the fact that both the data on deaths and the data on the number of individuals infected are subject to many different biases. We consider a Bayesian evidence synthesis approach which, while simple enough for researchers to understand and use, accounts for many important sources of uncertainty inherent in both the seroprevalence and mortality data. We estimate the COVID-19 IFR to be 0.38% (95% prediction interval of (0.03%, 1.19%)) for a typical population where the proportion of those aged over 65 years old is 9% (the approximate worldwide value). Our results suggest that, despite immense efforts made to better understand the COVID-19 IFR, there remains a large amount of uncertainty and unexplained heterogeneity surrounding this important statistic.

2021 ◽  
Author(s):  
Nathan Green ◽  
Fiacre Agossa ◽  
Boulais Yovogon ◽  
Richard Oxborough ◽  
Jovin Kitau ◽  
...  

Background: Prospective malaria public health interventions are initially tested for entomological impact using standardised experimental hut trials. In some cases, data are collated as aggregated counts of potential outcomes from mosquito feeding attempts given the presence of an insecticidal intervention. Comprehensive data i.e. full breakdowns of probable outcomes of mosquito feeding attempts, are more rarely available. Bayesian evidence synthesis is a framework that explicitly combines data sources to enable the joint estimation of parameters and their uncertainties. The aggregated and comprehensive data can be combined using an evidence synthesis approach to enhance our inference about the potential impact of vector control products across different settings over time. Methods: Aggregated and comprehensive data from a meta-analysis of the impact of Actellic 300CS (Syngenta), an indoor residual spray (IRS) product, used on wall surfaces to kill mosquitoes and reduce malaria transmission, were analysed using a series of statistical models to understand the benefits and limitations of each. Results: Many more data are available in aggregated format (N = 23 datasets, 5 studies) relative to comprehensive format (N = 3 datasets, 2 studies). The evidence synthesis model was most robust at predicting the probability of mosquitoes dying or surviving and blood-feeding. Generating odds ratios from the correlated Bernoulli random sample indicates that when mortality and blood-feeding are positively correlated, as exhibited in our data, the number of successfully fed mosquitoes will be under-estimated. Analysis of either dataset alone is problematic because aggregated data require an assumption of independence and there are few and variable data in the comprehensive format. Conclusions: We developed an approach to combine sources from trials to maximise the inference that can be made from such data. Bayesian evidence synthesis enables inference from multiple datasets simultaneously to give a more informative result and highlight conflicts between sources. Advantages and limitations of these models are discussed.


2019 ◽  
Author(s):  
Melanie Chitwood ◽  
Daniele M. Pelissari ◽  
Gabriela Drummond Marques da Silva ◽  
Patricia Bartholomay ◽  
Marli Souza Rocha ◽  
...  

BMJ ◽  
2015 ◽  
Vol 350 (may12 7) ◽  
pp. h2016-h2016 ◽  
Author(s):  
J. A. Bogaards ◽  
J. Wallinga ◽  
R. H. Brakenhoff ◽  
C. J. L. M. Meijer ◽  
J. Berkhof

2016 ◽  
Vol 27 (7) ◽  
pp. 1043-1046 ◽  
Author(s):  
Benjamin Scheibehenne ◽  
Tahira Jamil ◽  
Eric-Jan Wagenmakers

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