scholarly journals Survival of self-replicating molecules under transient compartmentalization with natural selection

2019 ◽  
Author(s):  
Gabin Laurent ◽  
Luca Peliti ◽  
David Lacoste

AbstractThe problem of the emergence and survival of self-replicating molecules in origin-of-life scenarios is plagued by the error catastrophe, which is usually escaped by considering effects of compartmentalization, as in the stochastic corrector model. By addressing the problem in a simple system composed of a self-replicating molecule (a replicase) and a parasite molecule that needs the replicase for copying itself, we show that transient (rather than permanent) compartmentalization is sufficient to the task. We also exhibit a regime in which the concentrations of the two kinds of molecules undergo sustained oscillations. Our model should be relevant not only for origin-of-life scenarios but also for describing directed evolution experiments, which increasingly rely on transient compartmentalization with pooling and natural selection.


Life ◽  
2019 ◽  
Vol 9 (4) ◽  
pp. 78 ◽  
Author(s):  
Gabin Laurent ◽  
Luca Peliti ◽  
David Lacoste

The problem of the emergence and survival of self-replicating molecules in origin-of-life scenarios is plagued by the error catastrophe, which is usually escaped by considering effects of compartmentalization, as in the stochastic corrector model. By addressing the problem in a simple system composed of a self-replicating molecule (a replicase) and a parasite molecule that needs the replicase for copying itself, we show that transient (rather than permanent) compartmentalization is sufficient to the task. We also exhibit a regime in which the concentrations of the two kinds of molecules undergo sustained oscillations. Our model should be relevant not only for origin-of-life scenarios but also for describing directed evolution experiments, which increasingly rely on transient compartmentalization with pooling and natural selection.



Author(s):  
John Maynard Smith ◽  
Eors Szathmary

Imagine that, when the first spacemen step out of their craft onto the surface of one of the moons of Jupiter, they are confronted by an object the size of a horse, rolling towards them on wheels, and bearing on its back a concave disc pointing towards the Sun. They will at once conclude that the object is alive, or has been made by something alive. If all they find is a purple smear on the surface of the rocks, they will have to work harder to decide. This is the phenotypic approach to the definition of life: a thing is alive if it has parts, or ‘organs’, which perform functions. William Paley explained the machine-like nature of life by the existence of a creator: today, we would invoke natural selection. There are, however, dangers in assuming that any entity with the properties of a self-regulating machine is alive, or an artefact. In section 2.2, we tell the story of a self-regulating atomic reactor, the Oklo reactor, which is neither. This story can be taken in one of three ways. First, it shows the dangers of the phenotypic definition of life: not all complex entities are alive. Second, it illustrates how the accidents of history can give rise spontaneously to surprisingly complex machine-like entities. The relevance of this to the origin of life is obvious. In essence, the problem is the following. How could chemical and physical processes give rise, without natural selection, to entities capable of hereditary replication, which would therefore, from then on, evolve by natural selection? The Oklo reactor is an example of what can happen. Finally, section 2.2 can simply be skipped: the events were interesting, but do not resemble in detail those that led to the origin of life on Earth. There is an alternative to the phenotypic definition of life. It is to define as alive any entities that have the properties of multiplication, variation and heredity. The logic behind this definition, first proposed by Muller (1966), is that a population of entities with these properties will evolve by natural selection, and hence can be expected to acquire the complex adaptations for survival and reproduction that are characteristic of living things.



2013 ◽  
Vol 53 (supplement1-2) ◽  
pp. S202
Author(s):  
Takeshi Sunami ◽  
Norikazu Ichihashi ◽  
Takehiro Nishikawa ◽  
Yasuaki Kazuta ◽  
Tomoaki Matsuura ◽  
...  


2012 ◽  
Vol 81 (11) ◽  
pp. 114801 ◽  
Author(s):  
Zara Kirakosyan ◽  
David B. Saakian ◽  
Chin-Kun Hu


1970 ◽  
Vol 14 (1) ◽  
pp. 109-126 ◽  
Author(s):  
Gordon Allen


2011 ◽  
Vol 11 (1) ◽  
Author(s):  
Héctor Tejero ◽  
Arturo Marín ◽  
Francisco Montero


Author(s):  
Ji-Ming Chen

The current evolutionary theories have remained incomplete, controversial, and stagnant for multiple decades. To solve this issue, we create the concept of carbon-based entities (CBEs) which include methane, amino acids, proteins, organisms, and other entities containing carbon atoms. We deduce from thermodynamics the driving force, the progressive mechanisms, and the major steps of evolution of CBEs, and hence establish a comprehensive evolutionary theory termed the CBE evolutionary theory (CBEET). The CBEET demonstrates that evolution is driven hierarchy-wise by thermodynamics and favors fitness and diversity. It provides novel explanations for origin of life (abiogenesis), macroevolution, natural selection, sympatric speciation, evolution tempos, animal group evolution, and human society development in a comprehensive and comprehensible way. It elucidates that collaboration, altruism, obeying rules with properly increased freedom are important throughout evolution of CBEs. It refutes thoroughly the wrong notion that negative entropy (negentropy) leads to biological order which is distinct from thermodynamic order. It integrates with research advances in multiple disciplines and bridges laws of physics, evolution in biology, and harmonious development of human society.



2000 ◽  
Vol 69 (6) ◽  
pp. 1907-1916
Author(s):  
Yutaka Toyozawa


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