Neutron diffraction study of the atomic and molecular motion in hexamethylenetetramine

1970 ◽  
Vol 26 (2) ◽  
pp. 263-271 ◽  
Author(s):  
J. A. K. Duckworth ◽  
B. T. M. Willis ◽  
G. S. Pawley

An accurate neutron diffraction study has been carried out on a single-crystal of hexamethylenetetramine and the measured Bragg intensities have been analysed for the effects of thermal motion. Four different models of the thermal motion have been used in a least-squares refinement of the data: (1) conventional model with ellipsoidal atomic probability density functions; (2) cumulant expansion model with the thermal motion of each atom represented by both second and third cumulant coefficients; (3) as model (1) but including the restriction imposed on the temperature factors by assuming rigid-body molecular motion; (4) as model (2) but including the rigid-body restriction. The best fit is given by model (2), which takes into account deviations from the ellipsoidal atomic probability density functions brought about by libration. Of the rigid-body models, refinement is better for (4) than for (3). Two parameters only, (u 2) and (ω 2) of paper I (Willis & Pawley, Acta Cryst. (1970), A26, 254) are needed to specify the atomic thermal motions for models (3) and (4), whereas nine parameters are required for model (1) and twenty for model (2). The lone-pair electrons of the nitrogen atom have been detected by combining, in a difference Fourier synthesis, the present data with the X-ray measurements of Becka & Cruickshank (Proc. Roy. Soc. A (1963), 273, 435).

Science ◽  
1963 ◽  
Vol 139 (3560) ◽  
pp. 1208-1209 ◽  
Author(s):  
J. H. Burns ◽  
P. A. Agron ◽  
H. A. Levy

2003 ◽  
Vol 59 (5) ◽  
pp. 653-663 ◽  
Author(s):  
Anders Østergaard Madsen ◽  
Sax Mason ◽  
Sine Larsen

A neutron diffraction study of xylitol (C5O5H12) is presented. The nuclear anisotropic displacement parameters have been analysed showing that the carbon–oxygen skeleton conforms to a rigid-body (TLS) description. Applying this TLS model to the xylitol H atoms allows characterization of the internal molecular displacements of the H nuclei, assuming that the observed H nuclear mean-square displacements are a sum of the internal displacements and rigid-body displacements. These internal molecular displacements are very similar for chemically equivalent H atoms and in good agreement with the values obtained by other methods. In all cases the smallest eigenvector of the residual mean-square displacement tensor is almost parallel to the X—H bond. The use of ab initio calculations to obtain the internal vibrations in xylitol is discouraging. Another 12 structures extracted from the literature which have been investigated by neutron diffraction were subjected to a similar analysis. The results for the nine compounds investigated at low temperature conform to the results from xylitol and provide estimates of the internal vibrations of H atoms in a range of chemical environments.


1994 ◽  
Vol 48 ◽  
pp. 800-809 ◽  
Author(s):  
Bo Brummerstedt Iversen ◽  
Finn Krebs Larsen ◽  
Philip A. Reynolds ◽  
Brian N. Figgis ◽  
Synnøve Liaaen-Jensen ◽  
...  

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