scholarly journals N1-(Thiophen-2-ylmethyl)-N3,N3-bis[3-(thiophen-2-ylmethylammonio)propyl]propane-1,3-diammonium hexafluoridosilicate methanol trisolvate

2013 ◽  
Vol 69 (12) ◽  
pp. o1739-o1740
Author(s):  
Syed A. Haque ◽  
Dominique N. Cooper ◽  
Douglas R. Powell ◽  
Ramaiyer Venkatraman ◽  
Md. Alamgir Hossain
Keyword(s):  
Hydrogen Bonds ◽  
Tertiary Amine ◽  
Title Compound ◽  
The Other ◽  
Amine Group ◽  
Compound C ◽  
Protonated Amine ◽  
Amine Groups ◽  
Amine Function ◽  
Solvent Molecules

In the title compound, C24H40N4S34+·2SiF62−·3CH3OH, the central tertiary amine function is protonated and is connected to three thiophen-2-ylmethylamino-n-propyl groups, forming the arms of a T-shaped cation that has two pockets. Each arm contains one protonated secondary amine function, and each pocket is occupied by one SiF62−anion bondedviatwo N—H...F interactions with the protonated amine group on the middle arm, while two methanol solvent molecules are N—H...O hydrogen-bonded with the other secondary protonated amine groups on the side arms. Weak O—H...O and O—H...F hydrogen bonds between the solvent molecules and between the solvent molecules and the anions, respectively, are also observed. All three thiophene groups in the arms are disordered over two sets of sites, with occupancy ratios of 0.828 (3):0.172 (3), 0.910 (2):0.090 (2) and 0.890 (3):0.110 (3).

scholarly journals Bis[3-methyl-5-(pyridin-2-yl)-1H-pyrazol-4-yl] selenide methanol hemisolvate

2014 ◽  
Vol 70 (2) ◽  
pp. o127-o128
Author(s):  
Maksym Seredyuk ◽  
Natalia O. Sharkina ◽  
Elzbieta Gumienna-Kontecka ◽  
Anatoly A. Kapshuk
Keyword(s):  
Hydrogen Bonds ◽  
Title Compound ◽  
Three Dimensional ◽  
The Other ◽  
Dihedral Angles ◽  
Supramolecular Architecture ◽  
Asymmetric Unit ◽  
Compound C ◽  
Independent Molecules ◽  
Solvent Molecules

The asymmetric unit of the title compound, C18H16N6Se·0.5CH3OH, contains two independent molecules of bis[3-methyl-5-(pyridin-2-yl)-1H-pyrazol-4-yl] selenide with similar C—Se—C bond angles [99.30 (14) and 98.26 (13)°], and a methanol molecule of solvation. In one molecule, the dihedral angles between pyrazole and neighbouring pyridine rings are 18.3 (2) and 15.8 (2)°, and the corresponding angles in the other molecule are 13.5 (2) and 8.3 (2)°. In the crystal, the selenide and solvent molecules are linked by classical O—H...N and N—H...N hydrogen bonds, as well as by weak C—H...O and C—H...π interactions, forming a three-dimensional supramolecular architecture.

scholarly journals 4,4′-(1,2-Diazaniumylethane-1,2-diyl)dibenzoate trihydrate

IUCrData ◽  
2016 ◽  
Vol 1 (2) ◽  
Author(s):  
Takashi Numata ◽  
Shun Ikenomoto ◽  
Takashiro Akitsu
Keyword(s):  
Hydrogen Bonds ◽  
Dihedral Angle ◽  
Title Compound ◽  
Three Dimensional ◽  
Aromatic Rings ◽  
Compound C ◽  
Carboxylate Groups ◽  
Dimensional Network ◽  
Protonated Amine ◽  
Amine Groups

The title compound, C16H16N2O4·3H2O, was synthesized from (1R,2R)-1,2-bis(2-hydroxyphenyl)ethylenediamine and terephthalaldehydic acid. The compound crystallizes from water as a double zwitterion with protonated amine groups and deprotonated carboxylate groups. The dihedral angle formed by the aromatic rings is 3.86 (11)°. In the crystal, N—H...O and O—H...O hydrogen bonds link molecules into a three-dimensional network.

scholarly journals Tris(1H-benzimidazol-2-ylmethyl)amine methanol trisolvate

IUCrData ◽  
2020 ◽  
Vol 5 (3) ◽  
Author(s):  
Bertin Anzaldo-Olivares ◽  
Maribel Arroyo ◽  
Armando Ramírez-Monroy ◽  
Sylvain Bernès
Keyword(s):  
Hydrogen Bonds ◽  
Tertiary Amine ◽  
Title Compound ◽  
Imidazole Ring ◽  
The Other ◽  
Mirror Plane ◽  
Asymmetric Unit ◽  
Amine Groups ◽  
Multiple Hydrogen Bonds ◽  
Benzimidazole Group

The structure of the tertiary amine tris(1H-benzimidazol-2-ylmethyl)amine (C24H21N7, abbreviated ntb) has been previously reported twice as solvates, namely the monohydrate and the acetonitrile–methanol–water (1/0.5/1.5) solvate, both with the tripodal conformation formed via multiple hydrogen bonds. Now, we report the trimethanol adduct, ntb·3CH3OH, where the amine has the stair conformation featuring one benzimidazole group oriented in the opposite direction from the other two. The asymmetric unit contains one-half amine, completed through the mirror plane m in space group Pmn21 to form the ntb molecule, with the H atom for each imidazole moiety equally disordered between both N sites available in the imidazole ring. The asymmetric unit also contains one and a half methanol molecules, one being placed in general position with the hydroxy H atom disordered over two sites with occupancy ratio 1:1, while the other lies on the m mirror plane, and has thus its hydroxy H atom disordered by symmetry. As in the previously reported solvates, all imine and amine groups of the ntb molecules and the methanol molecules are involved in N—H...O and O—H...N hydrogen bonds. In the title compound, however, the involved H atom is systematically a disordered H atom provided by an imidazole group or a methanol molecule.

scholarly journals 2-[Hydroxy(2-methoxyphenyl)methyl]acrylonitrile

2012 ◽  
Vol 68 (8) ◽  
pp. o2467-o2467
Author(s):  
M. Bakthadoss ◽  
R. Selvakumar ◽  
R. Madhanraj ◽  
S. Murugavel
Keyword(s):  
Hydrogen Bonds ◽  
Diffraction Pattern ◽  
Benzene Ring ◽  
Dihedral Angle ◽  
Title Compound ◽  
Acta Cryst ◽  
Compound C ◽  
C And N ◽  
The Mean ◽  
Solvent Molecules

In the title compound, C11H11NO2, the mean planes formed by the benzene ring and the C and N atoms of the acryl group are almost orthogonal to each other, with a dihedral angle of 85.7 (1)°. During the structure analysis, it was observed that the unit cell contains large accessible voids, with a volume of 186.9 Å3, which may host disordered solvent molecules. This affects the diffraction pattern, mostly at low scattering angles. Density identified in these solvent-accessible areas was calculated and corrected for using the SQUEEZE routine inPLATON[Spek (2009),Acta Cryst.D65, 148–155]. Despite the presence of the hydroxy group in the molecule, no classical or nonclassical hydrogen bonds are observed in the structure. This may reflect the fact that the O—H group points towards the solvent-accessible void.

scholarly journals 2-(1,3-Benzodioxol-5-yl)-1H-benzimidazole

2014 ◽  
Vol 70 (2) ◽  
pp. o157-o157
Author(s):  
Nadir Ghichi ◽  
Mohamed Amine Benaouida ◽  
Ali Benosmane ◽  
Ali Benboudiaf ◽  
Hocine Merazig
Keyword(s):  
Hydrogen Bonds ◽  
Benzene Ring ◽  
Title Compound ◽  
Ring System ◽  
The Other ◽  
Dihedral Angles ◽  
Asymmetric Unit ◽  
Compound C ◽  
The Mean ◽  
Independent Molecules

The asymmetric unit of the title compound, C14H10N2O2, contains two independent molecules. In each molecule, the benzodioxole ring system displays an envelope conformation, with the methylene C atom located at the flap deviating by 0.081 (2) and 0.230 (2) Å from the mean plane formed by the other atoms. The dihedral angles between the benzoimidazole ring system (all atoms) and the benzodioxole benzene ring are 15.35 (6) and 10.99 (7)°. In the crystal, molecules are linked by N—H...N hydrogen bonds into chains running along the [101].

scholarly journals 3-Acetyl-1-(2,6-dichlorophenyl)thiourea

2012 ◽  
Vol 68 (8) ◽  
pp. o2307-o2307
Author(s):  
Sharatha Kumar ◽  
Sabine Foro ◽  
B. Thimme Gowda
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Dihedral Angle ◽  
Title Compound ◽  
The Other ◽  
Side Chain ◽  
Compound C

In the title compound, C9H8Cl2N2OS, the conformation of one of the N—H bonds isantito the C=S group and the other isantito the C=O group. Further, the conformations of the amide C=S and the C=O group areantito each other. The 2,6-dichlorophenyl ring and the 3-acetylthiourea side chain are inclined to one another at a dihedral angle of 83.44 (5)°. An intramolecular N—H...O hydrogen bond occurs. In the crystal, molecules form inversion dimers through pairs of N—H...S hydrogen bonds.

scholarly journals rac-Methyl (1R,3′S)-1′,1′′-dimethyl-2,2′′-dioxo-2H-dispiro[acenaphthylene-1,2′-pyrrolidine-3′,3′′-indoline]-4′-carboxylate

2013 ◽  
Vol 69 (2) ◽  
pp. o235-o235 ◽  
Author(s):  
G. Ganesh ◽  
Panneer Selvam Yuvaraj ◽  
Chinthalapuri Divakara ◽  
Boreddy S. R. Reddy ◽  
A. SubbiahPandi
Keyword(s):  
Hydrogen Bonds ◽  
Dihedral Angle ◽  
Title Compound ◽  
Ring System ◽  
The Other ◽  
Dihedral Angles ◽  
Indole Ring ◽  
Naphthalene Ring ◽  
Pyrrolidine Ring ◽  
Compound C

In the title compound, C26H22N2O4, the pyrrolidine ring adopts a twisted conformation and the other five-membered rings adopt envelope conformations with the spiro C atoms as the flap atoms. The naphthalene ring system of the dihydroacenaphthylene group forms dihedral angles of 89.2 (9) and 75.5 (6)° with the pyrrolidine and indole rings, respectively. The pyrrolidine ring makes a dihedral angle of 80.1 (9)° with the indole ring. In the crystal, molecules are linked by weak C—H...O hydrogen bonds, forming chains along theb-axis direction.

1-Hydroxycyclohexanecarboxylic acid

2007 ◽  
Vol 63 (11) ◽  
pp. o4213-o4213
Author(s):  
Liang-zhong Xu ◽  
Guang-Wei An ◽  
Xu-Dong Yang ◽  
Xu Yi
Keyword(s):  
Hydrogen Bonds ◽  
Broad Spectrum ◽  
Title Compound ◽  
Van Der Waals ◽  
Chair Conformation ◽  
The Other ◽  
Van Der Waals Interactions ◽  
Cyclohexane Ring ◽  
Compound C ◽  
Trade Name

The title compound, C7H12O3, was synthesized as an intermediate for the synthesis of the selective broad-spectrum nonsystemic acaricide spirodiclofen (trade name Envidor). The cyclohexane ring adopts a chair conformation. The molecules pack in layers, with O—H...O hydrogen bonds connecting the layers on one side and only van der Waals interactions on the other side.

scholarly journals Methyl 6-O-trityl-α-D-glucopyranoside methanol disolvate

2014 ◽  
Vol 70 (4) ◽  
pp. o492-o493
Author(s):  
Zeynep Gültekin ◽  
Mehmet Civan ◽  
Wolfgang Frey ◽  
Tuncer Hökelek
Keyword(s):  
Hydrogen Bonds ◽  
Title Compound ◽  
Three Dimensional ◽  
Supramolecular Architecture ◽  
Asymmetric Unit ◽  
Compound C ◽  
Solvent Molecules

The asymmetric unit of the title compound, C26H28O6·2CH3OH, contains two independent methyl 6-O-trityl-α-D-glucopyranoside molecules and four methanol solvent molecules. The rings of two methyl α-D-glucopyranoside adopt chair conformations. In the crystal, extensive intra- and intermolecular O—H...O and C—H...O hydrogen bonds link the molecules into a three-dimensional supramolecular architecture.

scholarly journals 1-Methyl-3-(2-methylphenyl)-3a-nitro-1,2,3,3a,4,9b-hexahydrochromeno[4,3-b]pyrrole

2012 ◽  
Vol 68 (6) ◽  
pp. o1735-o1735
Author(s):  
S. Sundaramoorthy ◽  
N. Sivakumar ◽  
M. Bakthadoss ◽  
D. Velmurugan
Keyword(s):  
Hydrogen Bonds ◽  
Title Compound ◽  
Chair Conformation ◽  
The Other ◽  
Asymmetric Unit ◽  
Pyran Ring ◽  
Pyrrolidine Ring ◽  
Π Interactions ◽  
Compound C ◽  
Independent Molecules

The asymmetric unit of the title compound, C19H20N2O3, contains two independent molecules in both of which the pyrrolidine ring adopts an envelope conformation, but with a C atom as the flap in one molecule and the N atom in the other. The pyran ring adopts a half-chair conformation in both molecules. In the crystal, molecules are linked via C—H...O hydrogen bonds and C—H...π interactions.

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