solvent molecules
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2022 ◽  
Vol 23 (2) ◽  
pp. 965
Author(s):  
Mina Han ◽  
Ikue Abe ◽  
Jihun Oh ◽  
Jaehoon Jung ◽  
Young Ji Son ◽  
...  

Fluorescent molecular assembly systems provide an exciting platform for creating stimuli-responsive nano- and microstructured materials with optical, electronic, and sensing functions. To understand the relationship between (i) the plausible molecular structures preferentially adopted depending on the solvent polarity (such as N,N-dimethylformamide [DMF], tetrahydrofuran [THF], and toluene), (ii) the resulting spectroscopic features, and (iii) self-assembled nano-, micro-, and macrostructures, we chose a sterically crowded triangular azo dye (3Bu) composed of a polar molecular core and three peripheral biphenyl wings. The chromophore changed the solution color from yellow to pink-red depending on the solvent polarity. In a yellow DMF solution, a considerable amount of the twisted azo form could be kept stable with the help of favorable intermolecular interactions with the solvent molecules. By varying the concentration of the DMF solution, the morphology of self-assembled structures was transformed from nanoparticles to micrometer-sized one-dimensional (1D) structures such as sticks and fibers. In a pink-red toluene solution, the periphery of the central ring became more planar. The resulting significant amount of the keto-hydrazone tautomer grew into micro- and millimeter-sized 1D structures. Interestingly, when THF-H2O (1:1) mixtures were stored at a low temperature, elongated fibers were stacked sideways and eventually developed into anisotropic two-dimensional (2D) sheets. Notably, subsequent exposure of visible-light-irradiated sphere samples to solvent vapor resulted in reversible fluorescence off↔on switching accompanied by morphological restoration. These findings suggest that rational selection of organic dyes, solvents, and light is important for developing reusable fluorescent materials.


Author(s):  
Elisabeth Aigeldinger ◽  
Lilliana Brandao ◽  
Troy Powell ◽  
Alaina C. Hartnett ◽  
Rui Sun ◽  
...  

The study of quadruple bonds between transition metals, in particular those of dimolybdenum, has revealed much about the two-electron bond. The solid-state structure of the quadruple-bonded dimolybdenum(II) complex tetrakis(μ-4-trifluoromethylbenzoato-κ2 O:O′)dimolybdenum(II) 0.762-pentane 0.238-tetrahydrofuran solvate, [Mo2(p-O2CC6H4CF3)4·2THF]·0.762C5H12·0.238C4H8O or [Mo2(C8H4F3O2)4(C4H8O)2]·0.762C5H12·0.238C4H8O is reported. The complex crystallizes within a triclinic cell and low symmetry (P\overline{1}) results from the intercalated pentane/THF solvent molecules. The paddlewheel structure at 100 K has inversion symmetry and comprises four bridging carboxylate ligands encases the Mo2(II,II) core that is characterized by two axially coordinated THF molecules and an Mo—Mo distance of 2.1098 (7) Å.


2022 ◽  
Author(s):  
Zohreh Nazarian ◽  
Seyed Shahriar Arab

With the aim of gaining understanding of the molecular basis of Candida antarctica lipase B (CALB) catalyzed regioselective mono aza-Michael addition of Benzhydrazide to Diethyl maleat (DEM) we decided to carry out molecular dynamics (MD) simulation studies in parallel with our experimental study. We found a correlation between the activity of CALB and the choice of solvent. Our study showed that solvent affects the performance of the enzyme due to the binding of solvent molecules to the enzyme active site region, and the solvation energy of substrates in the different solvents. We found that CALB is only active in nonpolar solvent (i.e. Hexane), and therefore we investigated the influence of Hexane on the catalytic activity of CALB for the reaction. The results of this study and related experimental validation from our studies have been discussed here.


Biomolecules ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 55
Author(s):  
Linda Celeste Montemiglio ◽  
Elena Gugole ◽  
Ida Freda ◽  
Cécile Exertier ◽  
Lucia D’Auria ◽  
...  

Substrate binding to the cytochrome P450 OleP is coupled to a large open-to-closed transition that remodels the active site, minimizing its exposure to the external solvent. When the aglycone substrate binds, a small empty cavity is formed between the I and G helices, the BC loop, and the substrate itself, where solvent molecules accumulate mediating substrate-enzyme interactions. Herein, we analyzed the role of this cavity in substrate binding to OleP by producing three mutants (E89Y, G92W, and S240Y) to decrease its volume. The crystal structures of the OleP mutants in the closed state bound to the aglycone 6DEB showed that G92W and S240Y occupied the cavity, providing additional contact points with the substrate. Conversely, mutation E89Y induces a flipped-out conformation of this amino acid side chain, that points towards the bulk, increasing the empty volume. Equilibrium titrations and molecular dynamic simulations indicate that the presence of a bulky residue within the cavity impacts the binding properties of the enzyme, perturbing the conformational space explored by the complexes. Our data highlight the relevance of this region in OleP substrate binding and suggest that it represents a key substrate-protein contact site to consider in the perspective of redirecting its activity towards alternative compounds.


2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Natalie Eichstaedt ◽  
Kasper P. van der Zwan ◽  
Lina Mayr ◽  
Renée Siegel ◽  
Jürgen Senker ◽  
...  

Abstract Potassium 15-crown-5 phenanthrenide and potassium 18-crown-6 phenanthrenide were synthesized and characterized by powder X-ray diffraction and 39K solid state NMR spectroscopy. While the radical carbanion is very reactive in solution, the crystals are stable and storable under inert atmosphere. For 15-crown-5, a sandwich-like complex of potassium is formed with two molecules of crown ether per potassium resulting in a coordination number of 10. For the larger 18-crown-6 ligand, a 1:1 complex is obtained and a coordination number of 6 for the potassium cation. In neither crystal structure solvent molecules are incorporated. The 15-crown-5 compound crystallizes faster and is less soluble in THF as compared to the 18-crown-6 compound. Both compounds form solid phenanthrenide that is easy to handle and can be applied for reduction reactions.


Author(s):  
Viktor Bulavin ◽  
Ivan V’unik ◽  
Andrii Kramarenko ◽  
Alexandr Rusinov

The type of short range solvation of Li+, Na+ K+, Rb+, Cs+, NH4+, Cl– , Br–, I–, ClO4– ions has been determined and analyzed in formamide (FA), N-methylformamide (MFA), N-dimethylformamide (DMF) at 298.15 K. In order to determine the type of ion solvation we used familiar-variable quantitative parameter (– ri), where  is the translational displacement length of ion, ri is its structural radius. It was found that the difference (– ri) is equal to the coefficient of attraction friction (CAF) of ions normalized to the solvent viscosity and hydrodynamic coefficient. The sign of the CAF is determined by the sign of the algebraic sum of its ion-molecular and intermolecular components. In amide solutions the studied cations are cosmotropes (positively solvated ((– ri) > 0), structure-making ions) and anions are chaotropes (negatively solvated ((– ri) < 0 ), structure-breaking ions). In the amide series, regardless of the sign (– ri), the near-solvation enhances, which can be explained by the weakening of the specific interaction between the solvent molecules. The decrease of  and respectively (– ri)  with increasing cation radius in a given solvent is the result of weakening of its coordinating force due to the decrease of charge density in the series Li+–Na+–K+–Rb+–Cs+. The increase of  (and (– ri), correspondingly) for the ions studied in the series FA- MFA-DMF can be explained by the weakening of intermolecular interactions in this series, which leads to the strengthening of solvation. It was found that for the halide ions in the series FA-MFA-DMF the regular growth of  parameter is explained by the weakening of the solvent structure. It was shown that Li+ ion with the lowest diffusion coefficient among cations and the highest  value forms kinetically stable complexes in amide solutions.


2021 ◽  
Vol 8 (1) ◽  
pp. 1
Author(s):  
Bruno J. C. Vieira ◽  
Laura C. J. Pereira ◽  
Vasco da Gama ◽  
Isabel C. Santos ◽  
Ana C. Cerdeira ◽  
...  

We present an extensive study to determine the relationship between structural features of spin crossover (SCO) systems based on N-(8-quinolyl)salicylaldimine (qsal) ligand derivatives and their magnetic properties. Thirteen new compounds with general formula [FeIII(5-X-qsal)2]+ (X = H, F, Cl, Br and I) coupled to Cl−, ClO4−, SCN−, PF6−, BF4− and BPh4− anions were prepared and magnetically characterized. The structure/properties correlations observed in these compounds were compared to those of salts with the same [FeIII(qsal-X)2]+ cations previously reported in the literature. These cations favour the LS configuration in compounds with the weakest connectivity. As connectivity increases most of them present HS states at room temperature and structures may be described as arrangements of parallel layers of interacting cation dimers. All the compounds based on these cations undergoing complete SCO transitions within the 4–300 K temperature range have high intralayer connectivity. If, however, the interlayer connectivity becomes very strong they remain blocked in the HS or in the LS state. The SCO transition may be affected by the slightest change of solvent molecules content, disorder or even crystallinity of the sample and it remain difficult to predict which kind of ligand substituent should be selected to obtain compounds with the desired connectivity.


Author(s):  
Dipanjana Ash ◽  
Sutapa Biswas Majee ◽  
Gopa Roy Biswas

Organogelators induce 3-D networked structures in apolar solvent molecules via cross-linking of non-covalent self-assembled aggregates below the gelation temperature. The objective of the present investigation was to evaluate the effects of different Span 40 concentrations on gelation kinetics and drug release behaviour of topical soybean oleogels. An inversely proportional relationship was observed between gelation time, melt flow index and concentration of Span 40 in soybean oleogels. Gompertz model was employed on gelation kinetics data to determine organogelator and oil parameters which are assumed to be associated with thermal stability and gel flexibility respectively. Formulation OGS2 (18% W/V Span 40) formed less viscous, thermally stable and presumably more flexible oleogel compared to other formulations. Nearly ideal zero-order release of paracetamol was achieved from OGS*2 following Fickian diffusion. However, slow drug release profiles, higher t50 values were observed with oleogels having 20-24% w/v Span 40 which followed Korsmeyer-Peppas kinetics with non-Fickian diffusion.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Hui Wang ◽  
Yan Wu ◽  
Ye Wang ◽  
Tingting Xu ◽  
Dezhi Kong ◽  
...  

AbstractIn conventional ethylene carbonate (EC)/propylene carbonate (PC) electrolyte, sodium metal reacts spontaneously and deleteriously with solvent molecules. This significantly limits the practical feasibility of high-voltage sodium metal batteries based on Na metal chemistry. Herein, we present a sodium metal alloy strategy via introducing NaIn and Na2In phases in a Na/In/C composite, aiming at boosting Na ion deposition stability in the common EC/PC electrolyte. Symmetric cells with Na/In/C electrodes achieve an impressive long-term cycling capability at 1 mA cm−2 (> 870 h) and 5 mA cm−2 (> 560 h), respectively, with a capacity of 1 mAh cm−2. In situ optical microscopy clearly unravels a stable Na ion dynamic deposition process on the Na/In/C composite electrode surface, attributing to a dendrite-free and smooth morphology. Furthermore, theoretical simulations reveal intrinsic mechanism for the reversible Na ion deposition behavior with the composite Na/In/C electrode. Upon pairing with a high-voltage NaVPOF cathode, Na/In/C anode illustrates a better suitability in SMBs. This work promises an alternative alloying strategy for enhancing Na metal interfacial stability in the common EC/PC electrolyte for their future applications.


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