Two new thiophosphoramide structures:N,N′,N′′-tricyclohexylphosphorothioic triamide andO,O′-diethyl (2-phenylhydrazin-1-yl)thiophosphonate

2014 ◽  
Vol 70 (12) ◽  
pp. 1147-1152 ◽  
Author(s):  
Mehrdad Pourayoubi ◽  
Mozhgan Abrishami ◽  
Václav Eigner ◽  
Marek Nečas ◽  
Michal Dušek ◽  
...  
Keyword(s):  
Hydrogen Bonds ◽  
Lone Electron Pair ◽  
Electron Pair ◽  
Bond Angle ◽  
Mirror Plane ◽  
Acta Cryst ◽  
Bond Lengths ◽  
Planar Configuration ◽  
Structural Database ◽  
The Ideal

The compoundN,N′,N′′-tricyclohexylphosphorothioic triamide, C18H36N3PS or P(S)[NHC6H11]3, (I), crystallizes in the space groupPnmawith the molecule lying across a mirror plane; one N atom lies on the mirror plane, whereas the bond-angle sum at the other N atom has a deviation of some 8° from the ideal value of 360° for a planar configuration. The orientation of the atoms attached to this nonplanar N atom corresponds to anantiorientation of the corresponding lone electron pair (LEP) with respect to the P=S group. The P=S bond length of 1.9785 (6) Å is within the expected range for compounds with a P(S)[N]3skeleton; however, it is in the region of the longest bond lengths found for analogous structures. This may be due to the involvement of the P=S group in N—H...S=P hydrogen bonds. InO,O′-diethyl (2-phenylhydrazin-1-yl)thiophosphonate, C10H17N2O2PS or P(S)[OC2H5]2[NHNHC6H5], (II), the bond-angle sum at the N atom attached to the phenyl ring is 345.1°, whereas, for the N atom bonded to the P atom, a practically planar environment is observed, with a bond-angle sum of 359.1°. A Cambridge Structural Database [CSD; Allen (2002).Acta Cryst. B58, 380–388] analysis shows a shift of the maximum population of P=S bond lengths in compounds with a P(S)[O]2[N] skeleton to the shorter bond lengths relative to compounds with a P(S)[N]3skeleton. The influence of this difference on the collective tendencies of N...S distances in N—H...S hydrogen bonds for structures with P(S)[N]3and P(S)[O]2[N] segments were studied through a CSD analysis.

Three new [XC(O)NH]P(O)[N(CH2C6H5)2]2phosphoric triamides (X= CClF2, 3-F-C6H4and 3,5-F2-C6H3): a database analysis of tertiary N-atom geometry in compounds with a C(O)NHP(O)[N]2core

2012 ◽  
Vol 68 (10) ◽  
pp. o399-o404 ◽  
Author(s):  
Mehrdad Pourayoubi ◽  
Jerry P. Jasinski ◽  
Samad Shoghpour Bayraq ◽  
Hossein Eshghi ◽  
Amanda C. Keeley ◽  
...  
Keyword(s):  
Lone Electron Pair ◽  
Electron Pair ◽  
Bond Angle ◽  
Carbonyl Groups ◽  
Database Analysis ◽  
Acta Cryst ◽  
Phosphoric Triamide ◽  
Minimal Deviation ◽  
Structural Database ◽  
Phosphoric Triamides

In the phosphoric triamidesN,N,N′,N′-tetrabenzyl-N′′-(2-chloro-2,2-difluoroacetyl)phosphoric triamide, C30H29ClF2N3O2P, (I),N,N,N′,N′-tetrabenzyl-N′′-(3-fluorobenzoyl)phosphoric triamide, C35H33FN3O2P, (II), andN,N,N′,N′-tetrabenzyl-N′′-(3,5-difluorobenzoyl)phosphoric triamide, C35H32F2N3O2P, (III), the tertiary N atoms of the dibenzylamido groups havesp2character with minimal deviation from planarity. The sums of the three bond angles about the N atoms in (I)–(III) deviate by less than 8° from the planar value of 360°. The geometries of the tertiary N atoms in all phosphoric triamides with C(O)NHP(O)[N]2skeletons deposited in the Cambridge Structural Database [CSD; Allen (2002).Acta Cryst.B58, 380–388] have been examined and the bond-angle sums at the two tertiary N atoms (SUM1 and SUM2) and the parameter ΔSUM (= SUM1 − SUM2) considered. It was found that in compounds with a considerable ΔSUM value, the more pyramidal N atoms are usually oriented so that the corresponding lone electron pair isantiwith respect to the P=O group. In (I), (II) and (III), the phosphoryl and carbonyl groups, separated by an N atom, areantiwith respect to each other. In the C(O)NHP(O) fragment of (I)–(III), the P—N bond is longer and the O—P—N angle is contracted compared with the other two P—N bonds and the O—P—N angles in the molecules. These effects are also seen in analogous compounds deposited in the CSD. Compounds with [C(O)NH]P(O)[N]X(X≠ N), such as compounds with a [C(O)NH]P(O)[N][O] skeleton, have not been considered here. Also, compounds with a [C(O)NH]2P(O)[N] fragment have not been reported to date. In the crystal structures of all three title compounds, adjacent molecules are linkedviapairs of P=O...H—N hydrogen bonds, forming dimers withCisymmetry.

Three new phosphoric triamides with a [C(O)NH]P(O)[N(C)(C)]2skeleton: a database analysis of C—N—C and P—N—C bond angles

2014 ◽  
Vol 70 (10) ◽  
pp. 998-1002 ◽  
Author(s):  
Mehrdad Pourayoubi ◽  
Atekeh Tarahhomi ◽  
Arnold L. Rheingold ◽  
James A. Golen
Keyword(s):  
Hydrogen Bonds ◽  
Crystal Structures ◽  
The Other ◽  
Database Analysis ◽  
Acta Cryst ◽  
Bond Angles ◽  
Cyclic Amide ◽  
Phosphoric Triamide ◽  
Structural Database ◽  
Phosphoric Triamides

InN,N,N′,N′-tetraethyl-N′′-(4-fluorobenzoyl)phosphoric triamide, C15H25FN3O2P, (I), andN-(2,6-difluorobenzoyl)-N′,N′′-bis(4-methylpiperidin-1-yl)phosphoric triamide, C19H28F2N3O2P, (II), the C—N—C angle at each tertiary N atom is significantly smaller than the two P—N—C angles. For the other new structure,N,N′-dicyclohexyl-N′′-(2-fluorobenzoyl)-N,N′-dimethylphosphoric triamide, C21H33FN3O2P, (III), one C—N—C angle [117.08 (12)°] has a greater value than the related P—N—C angle [115.59 (9)°] at the same N atom. Furthermore, for most of the analogous structures with a [C(=O)NH]P(=O)[N(C)(C)]2skeleton deposited in the Cambridge Structural Database [CSD; Allen (2002).Acta Cryst.B58, 380–388], the C—N—C angle is significantly smaller than the two P—N—C angles; exceptions were found for four structures with theN-methylcyclohexylamide substituent, similar to (III), one structure with the seven-membered cyclic amide azepan-1-yl substituent and one structure with anN-methylbenzylamide substituent. The asymmetric units of (I), (II) and (III) contain one molecule, and in the crystal structures, adjacent molecules are linkedviapairs of N—H...O=P hydrogen bonds to form dimers.

scholarly journals Crystal structures of the dioxane hemisolvates ofN-(7-bromomethyl-1,8-naphthyridin-2-yl)acetamide and bis[N-(7-dibromomethyl-1,8-naphthyridin-2-yl)acetamide]

2017 ◽  
Vol 73 (10) ◽  
pp. 1409-1413 ◽  
Author(s):  
Robert Rosin ◽  
Wilhelm Seichter ◽  
Monika Mazik
Keyword(s):  
Hydrogen Bonds ◽  
Crystal Structures ◽  
Lone Electron Pair ◽  
Electron Pair ◽  
Three Dimensional ◽  
Supramolecular Network ◽  
Halogen Bonds ◽  
Host Interactions ◽  
Compound Ii ◽  
Noncovalent Bonding

The syntheses and crystal structures ofN-(7-bromomethyl-1,8-naphthyridin-2-yl)acetamide dioxane hemisolvate, C11H10BrN3O·0.5C4H8O2, (I), and bis[N-(7-dibromomethyl-1,8-naphthyridin-2-yl)acetamide] dioxane hemisolvate, 2C11H9Br2N3O·0.5C4H8O2, (II), are described. The molecules adopt a conformation with the N—H hydrogen pointing towards the lone electron pair of the adjacent naphthyridine N atom. The crystals of (I) are stabilized by a three-dimensional supramolecular network comprising N—H...N, C—H...N and C—H...O hydrogen bonds, as well as C—Br...π halogen bonds. The crystals of compound (II) are stabilized by a three-dimensional supramolecular network comprising N—H...N, C—H...N and C—H...O hydrogen bonds, as well as C—H...π contacts and C—Br...π halogen bonds. The structure of the substituent attached in the 7-position of the naphthyridine skeleton has a fundamental influence on the pattern of intermolecular noncovalent bonding. While the Br atom of (I) participates in weak C—Br...Oguestand C—Br...π contacts, the Br atoms of compound (II) are involved in host–host interactionsviaC—Br...O=C, C—Br...N and C—Br...π bonding.

Trimethylammonium perchlorate at 97 K

2006 ◽  
Vol 62 (4) ◽  
pp. o1321-o1322
Author(s):  
Kazuma Gotoh ◽  
Rie Ishikawa ◽  
Hiroyuki Ishida
Keyword(s):  
Crystal Structure ◽  
Hydrogen Bonds ◽  
Title Compound ◽  
Mirror Plane ◽  
Acta Cryst ◽  
Compound C

The crystal structure of the title compound, C3H10N+·ClO4 −, redetermined at 97 K, is isostructural with C3H10N+·BF4 − [Gotoh, Ishikawa & Ishida (2005). Acta Cryst. E61, o4016–o4017]. Both the cation and the anion lie on a mirror plane and are connected by N—H...O and C—H...O hydrogen bonds.

scholarly journals N-(3,5-Dimethylphenyl)-P,P-diphenylphosphinic amide

IUCrData ◽  
2018 ◽  
Vol 3 (8) ◽  
Author(s):  
Niloufar Khojandi ◽  
Nigam P. Rath ◽  
Myron W. Jones
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Title Compound ◽  
Molecular Conformation ◽  
Bond Angle ◽  
Tetrahedral Geometry ◽  
Distorted Tetrahedral Geometry ◽  
Compound C ◽  
Tetrahedral Bond ◽  
The Ideal

In the title compound, C20H20NOP, the P atom, with a distorted tetrahedral geometry, is attached to an O atom, two phenyl groups, and a 3,5-dimethylaniline group. The N—P—C [102.29 (12) and 108.97 (12)°] and C—P—C [107.14 (12)°] bond angles are all smaller than the ideal 109.5° tetrahedral bond angle, whereas the O—P—C [113.07 (12) and 110.62 (12)°] and O—P—N [114.24 (13)°] angles are all larger than 109.5°. A weak intramolecular C—H...O hydrogen bond helps to establish the molecular conformation. In the crystal, the molecules are linked by N—H...O hydrogen bonds, generating [001] chains.

scholarly journals On the correlations between the polyhedron eccentricity parameters and the bond-valence sums for the cations with one lone electron pair. Addendum

2009 ◽  
Vol 65 (3) ◽  
pp. 401-402 ◽  
Author(s):  
Vasyl Sidey
Keyword(s):  
Lone Electron Pair ◽  
Electron Pair ◽  
Bond Valence ◽  
Acta Cryst

Systematic variations of the bond-valence sums calculated from the poorly determined bond-valence parameters [Sidey (2008), Acta Cryst. B64, 515–518] have been illustrated using a simple graphical scheme.

Hydrogen bonding at C=Se acceptors in selenoureas, selenoamides and selones

2016 ◽  
Vol 72 (3) ◽  
pp. 317-325 ◽  
Author(s):  
Dikima Bibelayi ◽  
Albert S. Lundemba ◽  
Frank H. Allen ◽  
Peter T. A. Galek ◽  
Juliette Pradon ◽  
...  
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Ab Initio ◽  
Crystal Engineering ◽  
Cambridge Structural Database ◽  
Bond Lengths ◽  
Partial Charges ◽  
Structural Database

In recent years there has been considerable interest in chalcogen and hydrogen bonding involving Se atoms, but a general understanding of their nature and behaviour has yet to emerge. In the present work, the hydrogen-bonding ability and nature of Se atoms in selenourea derivatives, selenoamides and selones has been explored using analysis of the Cambridge Structural Database andab initiocalculations. In the CSD there are 70 C=Se structures forming hydrogen bonds, all of them selenourea derivatives or selenoamides. Analysis of intramolecular geometries andab initiopartial charges show that this bonding stems from resonance-induced Cδ+=Seδ−dipoles, much like hydrogen bonding to C=S acceptors. C=Se acceptors are in many respects similar to C=S acceptors, with similar vdW-normalized hydrogen-bond lengths and calculated interaction strengths. The similarity between the C=S and C=Se acceptors for hydrogen bonding should inform and guide the use of C=Se in crystal engineering.

Structural characteristics of dibromoborylated benzene derivatives

2012 ◽  
Vol 68 (6) ◽  
pp. o226-o230 ◽  
Author(s):  
Sebastian Popp ◽  
Kai Ruth ◽  
Hans-Wolfram Lerner ◽  
Michael Bolte
Keyword(s):  
Crystal Structures ◽  
Aromatic Ring ◽  
Structural Characteristics ◽  
Geometric Parameters ◽  
Mirror Plane ◽  
Methyl Groups ◽  
Benzene Derivatives ◽  
Asymmetric Unit ◽  
Bond Lengths ◽  
Structural Database

The crystal structures of five dibromobenzene derivatives, namely dibromoborylbenzene, C6H5BBr2, (I), 1-dibromoboryl-4-(trimethylsilyl)benzene, C9H13BBr2Si, (II), 4-bromo-1-(dibromoboryl)benzene, C6H4BBr3, (III), dibromo(dimethylamino)(phenyl)borane, C8H12BBr2N, (IV), and dibromo(dimethylsulfanyl)[4-(trimethylsilyl)phenyl]borane, C11H19BBr2SSi, (V), have been determined. Compounds (I)–(IV) crystallize with one molecule in the asymmetric unit, but the molecule of (V) is located on a crystallographic mirror plane, implying twofold disorder of the central aromatic ring, the S atom and one of the methyl groups bonded to the S atom. In (I), (II) and (III), the B atom is three-coordinated, and in (IV) and (V) it is four-coordinated. The geometric parameters of the –BBr2group in these five structures agree well with those of comparable structures retrieved from the Cambridge Structural Database. The C—B and B—Br bond lengths in the molecules with a three-coordinated B atom are significantly shorter than those in the molecules with a four-coordinated B atom. In the compounds with a three-coordinated B atom, the –BBr2group tends to be coplanar with the aromatic ring to which it is attached.

scholarly journals Crystal structure ofcatena-poly[silver(I)-μ-L-tyrosinato-κ2O:N]

2015 ◽  
Vol 71 (3) ◽  
pp. m50-m51
Author(s):  
Aqsa Yousaf ◽  
Muhammad Nawaz Tahir ◽  
Abdul Rauf ◽  
Shafique Ahmad Awan ◽  
Saeed Ahmad
Keyword(s):  
Crystal Structure ◽  
Hydrogen Bonds ◽  
Double Layer ◽  
Title Compound ◽  
Bond Angle ◽  
Symmetry Code ◽  
Linear Arrangement ◽  
Bond Lengths ◽  
Polymeric Network ◽  
Polymeric Chains

The title compound, [Ag(C9H10NO3)]n, is a polymeric silver(I) complex of L-tyrosine. The AgIatom is connected to N and O atoms of two different L-tyrosine ligands in an almost linear arrangement, with an Ni—Ag—O1 bond angle of 173.4 (2)° [symmetry code: (i)x + 1,y,z]. The Ag—Niand Ag—O bond lengths are 2.156 (5) and 2.162 (4) Å, respectively. The polymeric chains extend along the crystallographicaaxis. Strong hydrogen bonds of the N—H...O and O—H...O types and additional C—H...O interactions connect these chains into a double-layer polymeric network in theabplane.

Structure at 200 and 298 K and X-ray investigations of the phase transition at 242 K of [NH2(CH3)2]3Sb2Cl9 (DMACA)

1996 ◽  
Vol 52 (2) ◽  
pp. 287-295 ◽  
Author(s):  
J. Zaleski ◽  
A. Pietraszko
Keyword(s):  
Crystal Structure ◽  
Phase Transition ◽  
Hydrogen Bonds ◽  
Room Temperature ◽  
Lone Electron Pair ◽  
Electron Pair ◽  
Temperature Phase ◽  
Space Group ◽  
X Ray ◽  
Low Temperature Phase

[NH2(CH3)2]3Sb2Cl9 (dimethylammonium nonachlorodiantimonate, DMACA) has, at 200 K, a monoclinic Pc space group, with a = 9.470 (3), b = 9.034 (3), c = 14.080 (4) Å, β = 95.81 (3)°, V = 1198.4 (4) Å3, Z = 2 [R = 0.024, wR = 0.025 for 4613 independent reflections with F > 4σ(F)]. At 298 K DMACA has P21/c space group with a = 9.686 (3), b = 9.037 (3), c = 14.066 (4) Å, β = 95.57 (3)°, V = 1225.3 (5) Å3, Z = 2 [R = 0.034, wR = 0.035 for 2736 reflections with F > 4σ(F)]. The anionic sublattice of DMACA consists of polyanionic (Sb2Cl9 3−), layers. In the low-temperature phase there are three crystallographically non-equivalent dimethylammonium cations in the crystal structure. One of the cations is located inside the polyanionic layers, two others – one ordered and one disordered – between the polyanionic layers. In the room-temperature phase there are two non-equivalent cations – both disordered – in the crystal structure. Temperature dependencies of lattice parameters between 200 and 300 K were determined. The occurrence of a second-order phase transition at T = 242 K was confirmed. The dependence of lengths of Sb—Cl contacts on the presence and strength of N—H...CI hydrogen bonds was discussed. It was found that lengths of Sb—Cl bonds may differ from each other by as much as 0.3 Å, because of the presence of N—H...Cl hydrogen bonds. These differences were attributed to distortion of the lone-electron pair on antimony(Ill).

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