Algorithmic aspects of protein structure similarity

40th Annual Symposium on Foundations of Computer Science (Cat. No.99CB37039) ◽

10.1109/sffcs.1999.814624 ◽

2003 ◽

Author(s):

D. Goldman ◽

S. Istrail ◽

C.H. Papadimitriou

Keyword(s):

Protein Structure ◽

Structure Similarity

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Faculty Opinions recommendation of Protein structure similarity clustering and natural product structure as guiding principles in drug discovery.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1165740.628785 ◽

2009 ◽

Author(s):

Robert Powers

Keyword(s):

Protein Structure ◽

Drug Discovery ◽

Natural Product ◽

Product Structure ◽

Structure Similarity ◽

Guiding Principles

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Protein Structure Similarity Clustering: Dynamic Treatment of PDB Structures Facilitates Clustering

Angewandte Chemie International Edition ◽

10.1002/anie.200602125 ◽

2006 ◽

Vol 45 (46) ◽

pp. 7766-7770 ◽

Author(s):

Bradley D. Charette ◽

Richard G. MacDonald ◽

Stefan Wetzel ◽

David B. Berkowitz ◽

Herbert Waldmann

Keyword(s):

Protein Structure ◽

Dynamic Treatment ◽

Structure Similarity

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SProt - from local to global protein structure similarity

2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) ◽

10.1109/bibmw.2010.5703785 ◽

2010 ◽

Author(s):

Jakub Galgonek ◽

David Hoksza

Keyword(s):

Protein Structure ◽

Structure Similarity

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2nd PCA on 3D protein structure similarity

2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA) ◽

10.1109/bicta.2010.5645321 ◽

2010 ◽

Author(s):

Y. Chen ◽

S. Chang ◽

X.H. Tian

Keyword(s):

Protein Structure ◽

3D Protein Structure ◽

Structure Similarity

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Parallel implementation of 3D protein structure similarity searches using a GPU and the CUDA

Journal of Molecular Modeling ◽

10.1007/s00894-014-2067-1 ◽

2014 ◽

Vol 20 (2) ◽

Author(s):

Dariusz Mrozek ◽

Miłosz Brożek ◽

Bożena Małysiak-Mrozek

Keyword(s):

Protein Structure ◽

Parallel Implementation ◽

3D Protein Structure ◽

Structure Similarity ◽

Similarity Searches

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Protein Structure Similarity Clustering and Natural Product Structure as Guiding Principles for Chemical Genomics

Ernst Schering Research Foundation Workshop - Chemical Genomics ◽

10.1007/978-3-540-37635-4_7 ◽

2007 ◽

pp. 89-109 ◽

Author(s):

M. A. Koch ◽

H. Waldmann

Keyword(s):

Protein Structure ◽

Natural Product ◽

Product Structure ◽

Chemical Genomics ◽

Structure Similarity ◽

Guiding Principles

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Improving Performance of Protein Structure Similarity Searching by Distributing Computations in Hierarchical Multi-Agent System

Computational Collective Intelligence. Technologies and Applications - Lecture Notes in Computer Science ◽

10.1007/978-3-642-16693-8_34 ◽

2010 ◽

pp. 320-329 ◽

Author(s):

Alina Momot ◽

Bożena Małysiak-Mrozek ◽

Stanisław Kozielski ◽

Dariusz Mrozek ◽

Łukasz Hera ◽

...

Keyword(s):

Protein Structure ◽

Similarity Searching ◽

Multi Agent System ◽

Agent System ◽

Multi Agent ◽

Structure Similarity

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Server-Side Query Language for Protein Structure Similarity Searching

Advances in Intelligent and Soft Computing - Human – Computer Systems Interaction: Backgrounds and Applications 2 ◽

10.1007/978-3-642-23172-8_26 ◽

2012 ◽

pp. 395-415 ◽

Author(s):

B. Małysiak-Mrozek ◽

S. Kozielski ◽

D. Mrozek

Keyword(s):

Protein Structure ◽

Query Language ◽

Similarity Searching ◽

Server Side ◽

Structure Similarity

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Protein Structure Similarity as Guiding Principle for Combinatorial Library Design

Biological Chemistry ◽

10.1515/bc.2003.140 ◽

2003 ◽

Vol 384 (9) ◽

Author(s):

M. A. Koch ◽

R. Breinbauer ◽

H. Waldmann

Keyword(s):

Protein Structure ◽

Combinatorial Library ◽

Library Design ◽

Guiding Principle ◽

Structure Similarity ◽

Combinatorial Library Design

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Design of compound libraries based on natural product scaffolds and protein structure similarity clustering (PSSC)

Molecular BioSystems ◽

10.1039/b503623b ◽

2005 ◽

Vol 1 (1) ◽

pp. 36 ◽

Author(s):

Rengarajan Balamurugan ◽

Frank J. Dekker ◽

Herbert Waldmann

Keyword(s):

Protein Structure ◽

Natural Product ◽

Compound Libraries ◽

Structure Similarity

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