scholarly journals Towards Eradicating the Nuisance of Numts and Noise in Molecular Biodiversity Assessment

Author(s):  
Natalie R. Graham ◽  
Rosemary G. Gillespie ◽  
Henrik Krehenwinkel
2013 ◽  
Vol 72 (s2) ◽  
Author(s):  
Michael Balke ◽  
Lars Hendrich ◽  
Emmanuel F.A. Toussaint ◽  
Xin Zhou ◽  
Thomas Von Rintelen ◽  
...  

Nematology ◽  
2019 ◽  
Vol 21 (3) ◽  
pp. 275-292 ◽  
Author(s):  
Dongwoo Kim ◽  
Hwal-Su Hwang ◽  
Jae-Kyoung Shim ◽  
JiYoung Yang ◽  
Jae Hong Pak ◽  
...  

Summary Dokdo Island has a unique biodiversity that has been preserved as a natural monument. Although the biodiversity of Dokdo has been investigated, little information is available regarding the nematodes. The diversity of plant-parasitic nematodes was investigated using both ITS and D2-D3 sequences. Nematodes extracted from 59 rhizosphere soil samples were morphologically identified as belonging to eight genera: Geocenamus, Helicotylenchus, Rotylenchulus, Heterodera, Paratylenchus, Pratylenchus, Pratylenchoides and Xiphinema. Further, nucleotide sequences were determined from 85 individuals of different genera for species diagnosis. We identified 13 species, including three species of the genus Pratylenchus (P. crenatus, P. kumamotoensis and P. neglectus), Helicotylenchus sp. 1, Rotylenchulus sp. 1, Paratylenchus nanus, Heterodera trifolii, Heterodera spp., Pratylenchoides ritteri, Geocenamus sp. 1, Geocenamus sp. 2, Xiphinema brevicollum and Xiphinema sp. 1. The dominant plant-parasitic nematode on Dokdo was P. crenatus, which was found in 25.4% of the samples. Our study provides important information about the biodiversity of plant-parasitic nematodes on Dokdo Island.


2021 ◽  
Vol 62 ◽  
pp. 101237
Author(s):  
Benjamin Rowe ◽  
Philip Eichinski ◽  
Jinglan Zhang ◽  
Paul Roe

Hydrobiologia ◽  
2021 ◽  
Author(s):  
Lyda R. Castro ◽  
Rachel S. Meyer ◽  
Beth Shapiro ◽  
Sabrina Shirazi ◽  
Samuel Cutler ◽  
...  

2021 ◽  
Vol 711 (1) ◽  
pp. 012003
Author(s):  
A H Ismail ◽  
N S Aziz ◽  
Z F Zainal ◽  
Z H Abdullahi ◽  
M T F Haziqah ◽  
...  

2012 ◽  
Vol 3 (4) ◽  
pp. 613-623 ◽  
Author(s):  
Douglas W. Yu ◽  
Yinqiu Ji ◽  
Brent C. Emerson ◽  
Xiaoyang Wang ◽  
Chengxi Ye ◽  
...  

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