Prominence of environmental and anthropogenic agents on the occurrence of coral reef bleaching syndrome and coral diseases

Coral reefs are the most productive ecosystems on Earth. They ensure the conservation of biodiversity and are a live habitat for 25% of all marine organisms. The main relationship on the coral reef is the symbiosis between corals and algae from the genus Symbiodinium (commonly called zooxanthellae). The authors of this publication have characterized and described the factors limiting the occurrence of coral reefs, including: water temperature, salinity, access to sunlight, contamination, physicochemical and hydromechanical parameters of water. Moreover anthropogenic threats to coral reefs have been specified, including diving tourism, ecological disasters (e.g. oil spills) and the development of marine aquaristics. Rapid changes in the basic living conditions are dangerous for corals and their symbionts and may cause the unsuitability of the new environment resulting in diseases such as coral bleaching. Corals bleaching is a disease associated with the break of the coral and algae relationship which results in a coral reef death on a global scale. Awareness of these negative factors, often related to human activity, may allow us to better understand the ecological processes that are the basis of reef functioning and might enable us to prevent and oppose to the changes and ecological recessions of coral reefs.

Ecoregional and temporal dynamics of dugong habitat use in a complex coral reef lagoon ecosystem

Mobile marine species display complex and nonstationary habitat use patterns that require understanding to design effective management measures. In this study, the spatio-temporal habitat use dynamics of the vulnerable dugong (Dugong dugon) were modelled from 16 satellite-tagged individuals in the coral reef lagoonal ecosystems of New Caledonia, South Pacific. Dugong residence time was calculated along the interpolated tracks (9371 hourly positions) to estimate intensity of use in three contrasting ecoregions, previously identified through hierarchical clustering of lagoon topographic characteristics. Across ecoregions, differences were identified in dugong spatial intensity of use of shallow waters, deeper lagoon waters and the fore-reef shelf outside the barrier reef. Maps of dugong intensity of use were predicted from these ecological relationships and validated with spatial density estimates derived from aerial surveys conducted for population assessment. While high correlation was found between the two datasets, our study extended the spatial patterns of dugong distribution obtained from aerial surveys across the diel cycle, especially in shallow waters preferentially used by dugongs at night/dusk during high tide. This study has important implications for dugong conservation and illustrates the potential benefits of satellite tracking and dynamic habitat use modelling to inform spatial management of elusive and mobile marine mammals.

Underwater Photogrammetry Captures the Initial Recovery of a Coral Reef at Lalo Atoll

Recovery of coral reefs after physical damage sustained from storm events can be affected by various factors. Here, we examined the initial recovery of a coral reef at the southern end of uninhabited Lalo Atoll of Papahānaumokuākea Marine National Monument after its complete destruction by Hurricane Walaka in 2018. While the site was still mostly (98%) covered by a mixture of rubble and sand, surveys utilizing underwater photogrammetry allowed for detailed quantitative assessments of benthic cover and confirmed colonization of coral (Pocillopora meandrina and Porites lobata), macroalgae and sponges. The proportion of sand in the rubble–sand mixture also decreased from the level observed in 2019. Visual fish surveys confirmed the presence of 35 reef fish species, a large increase from no reef fish in 2019, despite the low biotic benthic cover. Overall, the colonization of benthic organisms and the return of reef fish, which is potentially supported by the benthos and cryptofauna in the rubble bed, offer positive signs of reef recovery. The photogrammetric surveys in the present study captured the subtle changes in the benthic cover and provided us with a procedure to continue monitoring the succession of the site. Continuous monitoring of the site should reveal whether the reef returns to the original state of Acropora coral dominance or progresses towards a coral assemblage with a different composition.

Reconstructing High-Precision Coral Reef Geomorphology from Active Remote Sensing Datasets: A Robust Spatial Variability Modified Ordinary Kriging Method

Active remote sensing technology represented by multi-beam and lidar provides an important approach for the effective acquisition of underwater coral reef geomorphological information. A spatially continuous surface model of coral reef geomorphology reconstructed from active remote sensing datasets can provide important geomorphological parameters for the research of coral reef geomorphological and ecological changes. However, the surface modeling methods commonly used in previous studies, such as ordinary kriging (OK) and natural neighborhood (NN), often represent a “smoothing effect”, which causes the strong spatial variability of coral reefs to be imprecisely reflected by the reconstructed surfaces, thus affecting the accurate calculation of subsequent geomorphological parameters. In this study, a spatial variability modified OK (OK-SVM) method is proposed to reduce the impact of the “smoothing effect” on the high-precision reconstruction of the complex geomorphology of coral reefs. The OK-SVM adopts a collaborative strategy of global parameter transformation, local residual correction, and extremum correction to modify the spatial variability of the reconstructed model, while maintaining high local accuracy. The experimental results show that the OK-SVM has strong robustness to spatial variability modification. This method was applied to the geomorphological reconstruction of the northern area of a coral atoll in the Nansha Islands, South China Sea, and the performance was compared with that of OK and NN. The results show that OK-SVM has higher numerical accuracy and attribute accuracy in detailed morphological fidelity, and is more adaptable in the geomorphological reconstruction of coral reefs with strong spatial variability. This method is relatively reliable for achieving high-precision reconstruction of complex geomorphology of coral reefs from active remote sensing datasets, and has potential to be extended to other geomorphological reconstruction applications.

Larval Fish Assemblages and Distribution Patterns in the Zhongsha Atoll (Macclesfield Bank, South China Sea)

The remote coral reef in the deep sea is one of the most important nursery grounds for many marine fishes in the South China Sea. Diversity studies on larval fishes in this area are few, and the fish information on the coral reefs ecosystem is lacking. In this study, larval fishes were sampled during the summer of 2019 from the Zhongsha Atoll in the South China Sea and identified using DNA barcodes for the first time. Ninety-five larval fish species were recognized, belonging to 37 families and 12 orders based on morphological classification and DNA barcoding identification. The larval fish collected could be assigned to three categories as reef-associated, deep-sea, and pelagic. Most of the species were small fish with low commercial value but would play an essential role in the coral reef ecosystem. Some commercial fishes, including Auxis thazard, Euthynnus affinis, Sarda orientalis, Decapterus macarellus, Lutjanus viridis, and Centropyge vrolikii, were the dominant species higher than 2% total catch. The larval fish assemblage showed distinct spatial differences responding well with the geographical conditions. The most reef-associated fish occurred inside the Atoll, and the abyssal fish presented near the edge. In addition, larval fish spread over from the southwest to northeast may reflect the oceanography effect.