scholarly journals Inhibition activity prediction for a dataset of candidates’ drug by combining fuzzy logic with MLR/ANN QSAR models

2019 ◽  
Vol 93 (6) ◽  
pp. 1139-1157 ◽  
Author(s):  
Azizeh Abdolmaleki ◽  
Jahan B. Ghasemi
2012 ◽  
Vol 2 (3) ◽  
pp. 118-127
Author(s):  
Vandana Saini ◽  
Ajit Kumar

The correlation of structural features with the biological activity has always played an important role in drug designing process. The present paper discussesthe 2D‐ and 3D‐ Quantitative structure activity relationship (QSAR) studies, performed on a series of compounds related to saquinavir, an established HIV‐protease inhibitor (PI). The analysis was done on structure based calculations using various methods of QSAR like multiple linear regression (MLR), k‐nearest neighbour (k‐NN) and partial least square (PLS), to establish QSAR models for biological activity prediction of unknown compounds. A total of 27 peptidomimetics (Saquinavir analogues) were used for the study and models were developed using a training set of 22 compounds and test set of 5 compounds. The r2 value of 0.959 and crossvalidated r2 (q2) of 0.926 was obtained when models were generated using physicochemical descriptors during 2D‐QSAR analysis. In case of 3D‐QSAR analysis, database alignment of all compounds was done by field fit of steric and electrostatic molecular fields. 3D‐QSAR models generated showed r2 of 0.81 when steric and electrostatic fields were considered as basis of model generation. The meaningful information obtained from the study can be used for the design of saquinavir analogues having better inhibitory activity for HIV‐protease. Also, the QSAR models generated can be very useful to predict the HIV‐PIs and also for virtual screening for identification of new lead molecules.


2020 ◽  
Vol 101 ◽  
pp. 107751
Author(s):  
Pablo R. Duchowicz ◽  
Daniel O. Bennardi ◽  
Erlinda V. Ortiz ◽  
Nieves C. Comelli

2009 ◽  
Vol 7 (4) ◽  
pp. 909-922 ◽  
Author(s):  
Brij Sharma ◽  
Pradeep Pilania ◽  
Prithvi Singh ◽  
Susheela Sharma ◽  
Yenamandra Prabhakar

AbstractThe inhibition activities of sulfonamide and sulfamate derivatives for human carbonic anhydrases have been quantitatively analyzed using DRAGON descriptors. QSAR models have been obtained through combinatorial protocol-multiple linear regression (CP-MLR) computational procedure. For the hCA I inhibition activity, a higher value of information content index of the 1-order neighborhood symmetry (IC1) and a lower value of the Moran autocorrelations, MATS2v and MATS1p, along with a lower number of sulfur atoms in a molecular structure (nRSR) is beneficial to the activity. A higher number of 5-membered rings (nR05), a bigger distance between nitrogen and sulfur T(N..S), and a higher value of van der Waals volume weighted descriptor (GATS6v), are helpful to improve the hCA II inhibition activity. For the inhibition of hpCA, a lower value of the descriptors Jhetv and PW5, and higher values of the eigenvalue sum from Z weighted distance matrix, SEigZ, the Moran autocorrelation of lag 8 weighted by atomic van der Waals volumes, MATS8v and the Moran autocorrelation of lag 4 weighted by atomic Sanderson electronegativities, MATS4e are favorable. The derived significant models in such descriptors may further be used to synthesize new potential compounds and to decipher the mode of their actions at molecular level.


2019 ◽  
Vol 31 (3) ◽  
pp. 947-954
Author(s):  
Mariia Nesterkina ◽  
Luidmyla Ognichenko ◽  
Angela Shyrykalova ◽  
Iryna Kravchenko ◽  
Victor Kuz’min

2012 ◽  
Author(s):  
Thomas M. Crawford ◽  
Justin Fine ◽  
Donald Homa
Keyword(s):  

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