Low Genetic Diversity of the Coat Protein Gene among Blueberry Red Ringspot Virus Isolates

2012 ◽  
Vol 160 (10) ◽  
pp. 603-605 ◽  
Author(s):  
Elżbieta Kalinowska ◽  
Elżbieta Paduch-Cichal ◽  
Maria Chodorska
Keyword(s):  
Genetic Diversity ◽  
Coat Protein ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Ringspot Virus ◽  
Low Genetic Diversity ◽  
Virus Isolates

Variability in the coat protein gene of Papaya ringspot virus isolates from multiple locations in India

2004 ◽  
Vol 149 (12) ◽  
pp. 2435-2442 ◽  
Author(s):  
R. K. Jain ◽  
J. Sharma ◽  
A. S. Sivakumar ◽  
P. K. Sharma ◽  
A. S. Byadgi ◽  
...  
Keyword(s):  
Coat Protein ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Ringspot Virus ◽  
Papaya Ringspot Virus ◽  
Virus Isolates

scholarly journals Geographically distant isolates of the crinivirus Cucurbit yellow stunting disorder virus show very low genetic diversity in the coat protein gene

2001 ◽  
Vol 82 (4) ◽  
pp. 929-933 ◽  
Author(s):  
Luis Rubio ◽  
Yusuf Abou-Jawdah ◽  
Han-Xin Lin ◽  
Bryce W. Falk
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Variation ◽  
Coat Protein ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Single Strand Conformation Polymorphism ◽  
Sequence Analyses ◽  
Low Genetic Diversity ◽  
Conformation Polymorphism

The population structure and genetic variation of Cucurbit yellow stunting disorder virus (CYSDV) isolates were estimated by single-strand conformation polymorphism and nucleotide sequence analyses of the CYSDV coat protein gene. Analysis of 71 isolates collected from Spain, Jordan, Turkey, Lebanon, Saudi Arabia and North America showed that, from a genetic viewpoint, these isolates could be divided into two diverged subpopulations: an Eastern subpopulation composed of Saudi Arabian isolates and a Western subpopulation containing the rest of the CYSDV isolates. The genetic variation within the Western subpopulation was very small (nucleotide identity >99%) in spite of the extensive and discontinuous geographical distribution and different years of collection. We also estimated the within-isolate genetic structure and variation of three CYSDV isolates by analysing 30 clones per isolate. Our results showed that these CYSDV isolates had a quasispecies structure.

scholarly journals Sequence variability in the coat protein gene of Cowpea severe mosaic virus isolates from northeastern Brazil

2011 ◽  
Vol 36 (2) ◽  
pp. 121-124 ◽  
Author(s):  
José Evando A. Beserra Jr. ◽  
Eduardo C. Andrade ◽  
Rosa F.R. Araújo Camarço ◽  
Aline K.Q. Nascimento ◽  
José Albérsio A. Lima
Keyword(s):  
Coat Protein ◽  
Mosaic Virus ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Northeastern Brazil ◽  
Sequence Variability ◽  
Virus Isolates

scholarly journals Analysis of synonymous codon usage bias and phylogeny of coat protein gene in banana bract mosaic virus isolates

VirusDisease ◽  
2017 ◽  
Vol 28 (2) ◽  
pp. 156-163 ◽  
Author(s):  
Atul B. Patil ◽  
Vijayendra S. Dalvi ◽  
Akhilesh A. Mishra ◽  
Bal Krishna ◽  
Abdul Azeez
Keyword(s):  
Coat Protein ◽  
Codon Usage ◽  
Mosaic Virus ◽  
Coat Protein Gene ◽  
Codon Usage Bias ◽  
Protein Gene ◽  
Synonymous Codon ◽  
Synonymous Codon Usage ◽  
Virus Isolates ◽  
Synonymous Codon Usage Bias
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