scholarly journals Light Control of the Diffusion Coefficient of Active Fluids

2020 ◽  
Vol 142 (3) ◽  
Author(s):  
Thomas Vourc'h ◽  
Julien Léopoldès ◽  
Hassan Peerhossaini

Abstract Active fluids refer to the fluids that contain self-propelled particles such as bacteria or microalgae, whose properties differ fundamentally from the passive fluids. Such particles often exhibit an intermittent motion, with high-motility “run” periods broken by low-motility “tumble” periods. The average motion can be modified with external stresses, such as nutrient or light gradients, leading to a directed movement called chemotaxis and phototaxis, respectively. Using cyanobacterium Synechocystis sp. PCC 6803, a model microorganism to study photosynthesis, we track the bacterial response to light stimuli, under isotropic and nonisotropic (directional) conditions. In particular, we investigate how the intermittent motility is influenced by illumination. We find that just after a rise in light intensity, the probability to be in the run state increases. This feature vanishes after a typical characteristic time of about 1 h, when initial probability is recovered. Our results are well described by a mathematical model based on the linear response theory. When the perturbation is anisotropic, we observe a collective motion toward the light source (phototaxis). We show that the bias emerges due to more frequent runs in the direction of the light, whereas the run durations are longer whatever the direction.

Author(s):  
Thomas Vourc’h ◽  
Julien Léopoldès ◽  
Hassan Peerhossaini

Abstract Active fluids refer to the fluids that contain self-propelled particles such as bacteria or micro-algae, whose properties differ fundamentally from the passive fluids. Such particles often exhibit an intermittent motion; with high-motility “run” periods separated by low-motility “tumble” periods. The average motion can be modified with external stresses, such as nutrient or light gradient, leading to a directed movement called chemotaxis and phototaxis, respectively. Using cyanobacterium Synechocystis sp.PCC 6803, a model micro-organism to study photosynthesis, we track the bacterial response to light stimuli, under isotropic and non-isotropic conditions. In particular, we investigate how the intermittent motility is influenced by illumination. We find that just after a rise in light intensity, the probability to be in the run state increases. This feature vanishes after a typical time of about 1 hour, when initial probability is recovered. Our results are well described by a model based on the linear response theory. When the perturbation is anisotropic, the characteristic time of runs is longer whatever the direction, similar to what is observed with isotropic conditions. Yet we observe a collective motion toward the light source (phototaxis) and show that the bias emerges because of more frequent runs towards the light.


2003 ◽  
Vol 02 (02) ◽  
pp. 163-169 ◽  
Author(s):  
Dimitri Antoniou ◽  
Steven D. Schwartz

There are several kinds of low-frequency collective motions in proteins, which are believed to have a significant effect on their properties. We propose that a new kind of global collective motion in proteins are density fluctuations, which are slowly-varying, long-lived, propagating disturbances. These can be studied using the linear response formalism, which is a dynamical approximation that uses the full anharmonic interatomic potential. We have performed a molecular dynamics simulation of a realistic protein and have found results that are consistent with the theoretical predictions of linear response theory.


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