scholarly journals Complete Genome Sequence of Lactobacillus fermentum MTCC 25067 (Formerly TDS030603), a Viscous Exopolysaccharide-Producing Strain Isolated from Indian Fermented Milk

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Ni Putu Desy Aryantini ◽  
Jashbhai B. Prajapati ◽  
Tadasu Urashima ◽  
Kenji Fukuda
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fermented Milk ◽  
Lactobacillus Fermentum ◽  
Sequencing Technology ◽  
Content Type

ABSTRACT Lactobacillus fermentum MTCC 25067 (formerly TDS030603) is capable of producing a highly viscous slime exopolysaccharide. We report here the complete genome sequence of the strain, which was deciphered by using PacBio single-molecule real-time sequencing technology.

scholarly journals Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Raffael C. Inglin ◽  
Leo Meile ◽  
Jochen Klumpp ◽  
Marc J. A. Stevens
Keyword(s):  
Real Time ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type

ABSTRACT We present here the complete genome sequence of Lactobacillus plantarum RI-113, a strain isolated from salami, which was determined using single-molecule real-time sequencing.

scholarly journals Complete Genome Sequence of Citricoccus sp. Strain SGAir0253, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Lakshmi Chandrasekaran ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Citricoccus sp. strain SGAir0253 was isolated from indoor air collected in Singapore. Its genome sequence was assembled using single-molecule real-time sequencing. It comprises one chromosome of 3.32 Mb and two plasmids of 137 kb and 99 kb. The genome consists of 2,950 protein-coding genes, 49 tRNAs, and 9 rRNAs.

scholarly journals Complete Genome Sequence of Lysinibacillus sp. Strain SGAir0095, Isolated from Tropical Air Samples Collected in Singapore

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Anthony Wong ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Hybrid Strategy ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes

Lysinibacillus sp. strain SGAir0095 was isolated from tropical air samples collected in Singapore, and its complete genome was sequenced with a hybrid strategy using single-molecule real-time sequencing and short reads. The genome consists of one chromosome of 4.14 Mbp and encompasses 3,885 protein-coding genes, 39 rRNAs, and 101 tRNAs.

scholarly journals Complete Genome Sequence ofPaenibacillussp. Strain IHBB 10380 Using PacBio Single-Molecule Real-Time Sequencing Technology

2015 ◽  
Vol 3 (2) ◽  
Author(s):  
Mohinder Pal ◽  
Mohit K. Swarnkar ◽  
Rishu Thakur ◽  
Shashi Kiran ◽  
Sanjay Chhibber ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequencing Technology

scholarly journals Complete Genome Sequence of the Novel Temperate Clostridium difficile Phage phiCDIF1296T

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
Johannes Wittmann ◽  
Thomas Riedel ◽  
Boyke Bunk ◽  
Cathrin Spröer ◽  
Sabine Gronow ◽  
...  
Keyword(s):  
Clostridium Difficile ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The Novel ◽  
Sequencing Technology ◽  
Genetic Elements

Clostridium difficile contains many integrated and extrachromosomal genetic elements. In this study, we determined, annotated, and analyzed the complete genome of the C. difficile bacteriophage phiCDIF1296T using single-molecule real-time sequencing technology. To our knowledge, this represents the largest genome (131 kb) of a temperate C. difficile phage recognized so far.

scholarly journals The Completed PacBio Single-Molecule Real-Time Sequence of Methylosinus trichosporium Strain OB3b Reveals the Presence of a Third Large Plasmid

2017 ◽  
Vol 5 (49) ◽  
Author(s):  
John R. Heil ◽  
Michael D. J. Lynch ◽  
Jiujun Cheng ◽  
Ola Matysiakiewicz ◽  
Maya D’Alessio ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Time Sequence ◽  
Large Plasmid ◽  
Methylosinus Trichosporium ◽  
Content Type

ABSTRACT Presented here is the complete genome sequence of the well-studied Rhizobiales methanotroph Methylosinus trichosporium strain OB3b. The assembly contains 5,183,433 bp, corresponding to a chromosome of 4,508,832 bp and three circular plasmids of 285,280 bp, 209,102 bp, and 180,219 bp.

scholarly journals Complete Genome Sequence and Methylome Analysis of Micrococcus luteus SA211, a Halophilic, Lithium-Tolerant Actinobacterium from Argentina

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
F. L. Martínez ◽  
B. P. Anton ◽  
P. DasSarma ◽  
V. Rajal ◽  
V. Irazusta ◽  
...  
Keyword(s):  
High Altitude ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Micrococcus Luteus ◽  
Content Type ◽  
Wide Range ◽  
Methylome Analysis

Micrococcus luteus has been found in a wide range of habitats. We report the complete genome sequence and methylome analysis of strain SA211 isolated from a hypersaline, lithium-rich, high-altitude salt flat in Argentina with single-molecule real-time sequencing.

scholarly journals Complete Genome Sequence of Mycoplasma pneumoniae Type 2 Reference Strain FH Using Single-Molecule Real-Time Sequencing Technology

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Heta P. Desai ◽  
Shatavia S. Morrison ◽  
Maureen H. Diaz ◽  
Alvaro J. Benitez ◽  
Bernard J. Wolff ◽  
...  
Keyword(s):  
Mycoplasma Pneumoniae ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Reference Strain ◽  
Sequencing Technology ◽  
Content Type ◽  
The Pacific

ABSTRACT Mycoplasma pneumoniae type 2 strain FH was previously sequenced with Illumina (FH-Illumina) and 454 (FH-454) technologies according to Xiao et al. (2015) and Krishnakumar et al. (2010). Comparative analyses revealed differences in genomic content between these sequences, including a 6-kb region absent from the FH-454 submission. Here, we present a complete genome sequence of FH sequenced with the Pacific Biosciences RSII platform.

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