scholarly journals De Novo Assembly of the Quorum-Sensing Pandoraea sp. Strain RB-44 Complete Genome Sequence Using PacBio Single-Molecule Real-Time Sequencing Technology

2014 ◽  
Vol 2 (2) ◽  
Author(s):  
R. Ee ◽  
Y.-L. Lim ◽  
W.-F. Yin ◽  
K.-G. Chan
Keyword(s):  
Quorum Sensing ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
De Novo Assembly ◽  
Complete Genome ◽  
De Novo ◽  
Sequencing Technology

scholarly journals Complete Genome Sequence of Lactobacillus fermentum MTCC 25067 (Formerly TDS030603), a Viscous Exopolysaccharide-Producing Strain Isolated from Indian Fermented Milk

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Ni Putu Desy Aryantini ◽  
Jashbhai B. Prajapati ◽  
Tadasu Urashima ◽  
Kenji Fukuda
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fermented Milk ◽  
Lactobacillus Fermentum ◽  
Sequencing Technology ◽  
Content Type

ABSTRACT Lactobacillus fermentum MTCC 25067 (formerly TDS030603) is capable of producing a highly viscous slime exopolysaccharide. We report here the complete genome sequence of the strain, which was deciphered by using PacBio single-molecule real-time sequencing technology.

scholarly journals Complete Genome Sequence ofPaenibacillussp. Strain IHBB 10380 Using PacBio Single-Molecule Real-Time Sequencing Technology

2015 ◽  
Vol 3 (2) ◽  
Author(s):  
Mohinder Pal ◽  
Mohit K. Swarnkar ◽  
Rishu Thakur ◽  
Shashi Kiran ◽  
Sanjay Chhibber ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequencing Technology

scholarly journals Complete Genome Sequence of the Novel Temperate Clostridium difficile Phage phiCDIF1296T

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
Johannes Wittmann ◽  
Thomas Riedel ◽  
Boyke Bunk ◽  
Cathrin Spröer ◽  
Sabine Gronow ◽  
...  
Keyword(s):  
Clostridium Difficile ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The Novel ◽  
Sequencing Technology ◽  
Genetic Elements

Clostridium difficile contains many integrated and extrachromosomal genetic elements. In this study, we determined, annotated, and analyzed the complete genome of the C. difficile bacteriophage phiCDIF1296T using single-molecule real-time sequencing technology. To our knowledge, this represents the largest genome (131 kb) of a temperate C. difficile phage recognized so far.

scholarly journals Complete Genome Sequence of the Clostridium difficile Type Strain DSM 1296 T

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Thomas Riedel ◽  
Boyke Bunk ◽  
Johannes Wittmann ◽  
Andrea Thürmer ◽  
Cathrin Spröer ◽  
...  
Keyword(s):  
Clostridium Difficile ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Illumina Sequencing ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Sequencing Technology ◽  
Extrachromosomal Elements

In this study, we sequenced the complete genome of the Clostridium difficile type strain DSM 1296 T . A combination of single-molecule real-time (SMRT) and Illumina sequencing technology revealed the presence of one chromosome and two extrachromosomal elements, the bacteriophage phiCDIF1296T and a putative plasmid-like structure harboring genes of another bacteriophage.

scholarly journals Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Raffael C. Inglin ◽  
Leo Meile ◽  
Jochen Klumpp ◽  
Marc J. A. Stevens
Keyword(s):  
Real Time ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type

ABSTRACT We present here the complete genome sequence of Lactobacillus plantarum RI-113, a strain isolated from salami, which was determined using single-molecule real-time sequencing.

scholarly journals Complete Genome Sequence of Mycobacterium avium , Isolated from Commercial Domestic Pekin Ducks ( Anas platyrhynchos domestica ), Determined Using PacBio Single-Molecule Real-Time Technology

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Xiao-Heng Song ◽  
Hong-Xi Chen ◽  
Wang-Shu Zhou ◽  
Jiang-Bo Wang ◽  
Ma-Feng Liu ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virulent Strain ◽  
Domestic Ducks ◽  
Pekin Ducks ◽  
First Time

Mycobacterium avium is an important pathogenic bacterium in birds and has never, to our knowledge, reported to be isolated from domestic ducks. We present here the complete genome sequence of a virulent strain of Mycobacterium avium , isolated from domestic Pekin ducks for the first time, which was determined by PacBio single-molecule real-time technology.

scholarly journals Complete Genome Sequence of Citricoccus sp. Strain SGAir0253, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Lakshmi Chandrasekaran ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Citricoccus sp. strain SGAir0253 was isolated from indoor air collected in Singapore. Its genome sequence was assembled using single-molecule real-time sequencing. It comprises one chromosome of 3.32 Mb and two plasmids of 137 kb and 99 kb. The genome consists of 2,950 protein-coding genes, 49 tRNAs, and 9 rRNAs.

scholarly journals Complete Genome Sequence and Methylome Analysis of Bacillus caldolyticus NEB414

2018 ◽  
Vol 6 (6) ◽  
pp. e01605-17
Author(s):  
Alexey Fomenkov ◽  
Tamas Vincze ◽  
Fana Mersha ◽  
Richard J. Roberts
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Restriction Enzyme ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Complete Sequence ◽  
Original Source ◽  
Methylome Analysis

ABSTRACT Bacillus caldolyticus NEB414 is the original source strain for the restriction enzyme BclI. Its complete sequence and full methylome were determined using single-molecule real-time sequencing.

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