scholarly journals Microbial Sulfur Cycle in Two Hydrothermal Chimneys on the Southwest Indian Ridge

mBio ◽  
2014 ◽  
Vol 5 (1) ◽  
Author(s):  
Huiluo Cao ◽  
Yong Wang ◽  
On On Lee ◽  
Xiang Zeng ◽  
Zongze Shao ◽  
...  
Keyword(s):  
Microbial Community ◽  
Sulfur Oxidation ◽  
Sulfur Cycle ◽  
Southwest Indian Ridge ◽  
Sulfate Reducing ◽  
Sulfur Oxidizing ◽  
Indian Ridge ◽  
Midocean Ridge ◽  
Reducing Bacteria ◽  
Hydrothermal Fields

ABSTRACT Sulfur is an important element in sustaining microbial communities present in hydrothermal vents. Sulfur oxidation has been extensively studied due to its importance in chemosynthetic pathways in hydrothermal fields; however, less is known about sulfate reduction. Here, the metagenomes of hydrothermal chimneys located on the ultraslow-spreading Southwest Indian Ridge (SWIR) were pyrosequenced to elucidate the associated microbial sulfur cycle. A taxonomic summary of known genes revealed a few dominant bacteria that participated in the microbial sulfur cycle, particularly sulfate-reducing Deltaproteobacteria. The metagenomes studied contained highly abundant genes related to sulfur oxidation and reduction. Several carbon metabolic pathways, in particular the Calvin-Benson-Bassham pathway and the reductive tricarboxylic acid cycles for CO2 fixation, were identified in sulfur-oxidizing autotrophic bacteria. In contrast, highly abundant genes related to the oxidation of short-chain alkanes were grouped with sulfate-reducing bacteria, suggesting an important role for short-chain alkanes in the sulfur cycle. Furthermore, sulfur-oxidizing bacteria were associated with enrichment for genes involved in the denitrification pathway, while sulfate-reducing bacteria displayed enrichment for genes responsible for hydrogen utilization. In conclusion, this study provides insights regarding major microbial metabolic activities that are driven by the sulfur cycle in low-temperature hydrothermal chimneys present on an ultraslow midocean ridge. IMPORTANCE There have been limited studies on chimney sulfides located at ultraslow-spreading ridges. The analysis of metagenomes of hydrothermal chimneys on the ultraslow-spreading Southwest Indian Ridge suggests the presence of a microbial sulfur cycle. The sulfur cycle should be centralized within a microbial community that displays enrichment for sulfur metabolism-related genes. The present study elucidated a significant role of the microbial sulfur cycle in sustaining an entire microbial community in low-temperature hydrothermal chimneys on an ultraslow spreading midocean ridge, which has characteristics distinct from those of other types of hydrothermal fields.

Pyrite and the Global Environment

Pyrite ◽  
2015 ◽  
Author(s):  
David Rickard
Keyword(s):  
Iron Sulfide ◽  
Sulfide Oxidation ◽  
Sulfate Reducing Bacteria ◽  
Sulfide Mineral ◽  
Sulfur Cycle ◽  
Sulfate Reducing ◽  
Global Dynamic ◽  
Sulfur Oxidizing ◽  
Life On Earth ◽  
Reducing Bacteria

The two basic processes concerning pyrite in the environment are the formation of pyrite, which usually involves reduction of sulfate to sulfide, and the destruction of pyrite, which usually involves oxidation of sulfide to sulfate. On an ideal planet these two processes might be exactly balanced. But pyrite is buried in sediments sometimes for hundreds of millions of years, and the sulfur in this buried pyrite is removed from the system, so the balance is disturbed. The lack of balance between sulfide oxidation and sulfate reduction powers a global dynamic cycle for sulfur. This would be complex enough if this were the whole story. However, as we have seen, both the reduction and oxidation arms of the global cycle are essentially biological—specifically microbiological—processes. This means that there is an intrinsic link between the sulfur cycle and life on Earth. In this chapter, we examine the central role that pyrite plays, and has played, in determining the surface environment of the planet. In doing so we reveal how pyrite, the humble iron sulfide mineral, is a key component of maintaining and developing life on Earth. In Chapter 4 we concluded that Mother Nature must be particularly fond of pyrite framboids: a thousand billion of these microscopic raspberry-like spheres are formed in sediments every second. If we translate this into sulfur production, some 60 million tons of sulfur is buried as pyrite in sediments each year. But this is only a fraction of the total amount of sulfide produced every year by sulfate-reducing bacteria. In 1982 the Danish geomicrobiologist Bo Barker Jørgensen discovered that as much as 90% of the sulfide produced by sulfate-reducing bacteria was rapidly reoxidized by sulfur-oxidizing microorganisms. Sulfate-reducing microorganisms actually produce about 300 million tons of sulfur each year, but about 240 million tons is reoxidized. The magnitude of the sulfide production by sulfate-reducing bacte­ria can be appreciated by comparison with the sulfur produced by volcanoes. As discussed in Chapter 5, it was previously supposed that all sulfur, and thus pyrite, had a volcanic origin. In fact volcanoes produce just 10 million tons of sulfur each year.

scholarly journals Molecular Analysis of the Diversity of Sulfate-Reducing and Sulfur-Oxidizing Prokaryotes in the Environment, Using aprA as Functional Marker Gene

2007 ◽  
Vol 73 (23) ◽  
pp. 7664-7679 ◽  
Author(s):  
Birte Meyer ◽  
Jan Kuever
Keyword(s):  
Microbial Community ◽  
Microbial Diversity ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Marker Gene ◽  
Sulfur Cycle ◽  
Estuarine Sediments ◽  
Rrna Gene ◽  
Sulfate Reducing ◽  
Manganese Crust ◽  
Sulfur Oxidizing

ABSTRACT The dissimilatory adenosine-5′-phosposulfate reductase is a key enzyme of the microbial sulfate reduction and sulfur oxidation processes. Because the alpha- and beta-subunit-encoding genes, aprBA, are highly conserved among sulfate-reducing and sulfur-oxidizing prokaryotes, they are most suitable for molecular profiling of the microbial community structure of the sulfur cycle in environment. In this study, a new aprA gene-targeting assay using a combination of PCR and denaturing gradient gel electrophoresis is presented. The screening of sulfate-reducing and sulfur-oxidizing reference strains as well as the analyses of environmental DNA from diverse habitats (e.g., microbial mats, invertebrate tissue, marine and estuarine sediments, and filtered hydrothermal water) by the new primer pair revealed an improved microbial diversity coverage and less-pronounced template-to-PCR product bias in direct comparison to those of the previously published primer set (B. Deplancke, K. R. Hristova, H. A. Oakley, V. J. McCracken, R. Aminov, R. I. Mackie, and H. R. Gaskins, Appl. Environ. Microbiol. 66:2166-2174, 2000). The concomitant molecular detection of sulfate-reducing and sulfur-oxidizing prokaryotes was confirmed. The new assay was applied in comparison with the 16S rRNA gene-based analysis to investigate the microbial diversity of the sulfur cycle in sediment, seawater, and manganese crust samples from four study sites in the area of the Lesser Antilles volcanic arc, Caribbean Sea (Caribflux project). The aprA gene-based approach revealed putative sulfur-oxidizing Alphaproteobacteria of chemolithoheterotrophic lifestyle to have been abundant in the nonhydrothermal sediment and water column. In contrast, the sulfur-based microbial community that inhabited the surface of the volcanic manganese crust was more complex, consisting predominantly of putative chemolithoautotrophic sulfur oxidizers of the Betaproteobacteria and Gammaproteobacteria.

scholarly journals Microbial Communities of the Hydrothermal Scaly-Foot Snails From Kairei and Longqi Vent Fields

2021 ◽  
Vol 8 ◽  
Author(s):  
Shijie Bai ◽  
Hengchao Xu ◽  
Xiaotong Peng
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Hydrothermal Vent ◽  
Current Knowledge ◽  
Microbial Community Composition ◽  
Sulfur Cycle ◽  
Southwest Indian Ridge ◽  
Rrna Gene ◽  
Indian Ridge ◽  
Bacterial Lineages

The microbial communities of the hydrothermal Scaly-foot Snails (SFSs) from independent hydrothermal vent fields have not been investigated in depth. In this study, we collected SFSs from two different hydrothermal environments located on the Central Indian Ridge (CIR) and the Southwest Indian Ridge (SWIR), the Kairei and Longqi vent fields, respectively. Additionally, one SFS collected from the Kairei vent field was reared for 16 days with in situ deep-sea seawater. The epibiotic and internal samples of SFSs, including ctenidium, esophageal gland, visceral mass, shells, and scales, were examined for microbial community compositions based on the 16S rRNA gene. Our results revealed significant differences in microbial community composition between SFSs samples collected from Kairei and Longqi vent fields. Moreover, the microbial communities of epibiotic and internal SFS samples also exhibited significant differences. Epibiotic SFS samples were dominated by the bacterial lineages of Sulfurovaceae, Desulfobulbaceae, Flavobacteriaceae, and Campylobacteraceae. While in the internal SFS samples, the genus Candidatus Thiobios, affiliated with the Chromatiaceae, was the most dominant bacterial lineage. Furthermore, the core microbial communities of all samples, which accounted for 78 ∼ 92% of sequences, were dominated by Chromatiaceae (27 ∼ 49%), Sulfurovaceae (10 ∼ 35%), Desulfobulbaceae (2 ∼ 7%), and Flavobacteriaceae (3 ∼ 7%) at the family level. Based on the results of random forest analysis, we also found the genera Desulfobulbus and Sulfurovum were the primary bacterial lineages responsible for the dissimilarity of microbial communities between the SFS samples collected from the Kairei and Longqi vent fields. Our results indicated that the microbial lineages involved in the sulfur cycle were the key microorganisms, playing a crucial role in the hydrothermal vent ecosystems. Our findings expand current knowledge on microbial diversity and composition in the epibiotic and internal microbial communities of SFS collected from different hydrothermal vent fields.

scholarly journals Accelerated low water corrosion: the microbial sulfur cycle in microcosm

2019 ◽  
Vol 3 (1) ◽  
Author(s):  
Martin Smith ◽  
Marjorie Bardiau ◽  
Richard Brennan ◽  
Heidi Burgess ◽  
Jonathan Caplin ◽  
...  
Keyword(s):  
Steel Corrosion ◽  
Sulfur Oxidation ◽  
Sulfur Cycle ◽  
Bacterial Activity ◽  
Corrosion Products ◽  
Oxidation States ◽  
Iron Sulfides ◽  
Sulfate Reducing ◽  
Global Spread ◽  
Reducing Bacteria

Abstract Accelerated low water corrosion is a form of marine steel corrosion caused by bacterial activity. It has a global spread and is potentially responsible for billions of pounds of damage. We have determined in detail both the chemistry of corrosion products and the associated microbiology at a UK site. The corrosion products form a layered structure with iron sulfides at the steel surface and iron oxides and sulfates in contact with water. The iron sulfides are formed by reaction of steel with hydrogen sulfide formed by sulfate-reducing bacteria and are oxidised through a series of sulfur oxidation states by sulfide-oxidising bacteria, forming acid at all stages and encompassing the whole of the bacterial sulfur cycle. The bacteria involved are endemic in anoxic bed sediment, and the process is a response to the presence of steel as an electron donor, and the generation of anoxic microenvironments within corrosion products.

Microbial community change of sulfate reduction and sulfur oxidation bacteria in the activated sludge cultivated with acetate and peptone

2006 ◽  
Vol 54 (8) ◽  
pp. 111-119 ◽  
Author(s):  
N. Miyazato ◽  
R. Yamamoto-Ikemoto ◽  
S. Takamatsu
Keyword(s):  
Microbial Community ◽  
Activated Sludge ◽  
Sulfur Oxidation ◽  
Sulfate Reducing Bacteria ◽  
Community Change ◽  
Oxidation Activity ◽  
Sulfate Reducing ◽  
Sulfur Bacteria ◽  
Reducing Bacteria

The growth of sulfate reducing bacteria (SRB) and filamentous sulfur bacteria was monitored on a laboratory scale in activated sludge reactors using acetate and peptone as the artificial wastewater. When the artificial wastewater contained acetate and peptone, filamentous bacteria increased in the sludge and the SVI values increased. There was a good correlation between sulfate reducing activity and sulfur oxidation activity in the produced sludge. The microbial community change of filamentous sulfur bacteria and sulfate reducing bacteria was analyzed using the fluorescent in situ hybridization (FISH) method. The tendency for the growth of filamentous sulfur bacteria Thiothrix eikelboomii following the growth of SRB was observed. The percentage of SRB385- hybridized cells and DNMA657-hybridized cells found in the total cell area increased from 2–3% to 7–10% when the filamentous bulking occurred.

scholarly journals Lipids of sulfate-reducing bacteria and sulfur-oxidizing bacteria found in the Dongsheng uranium deposit

2012 ◽  
Vol 57 (11) ◽  
pp. 1311-1319 ◽  
Author(s):  
Lei Jiang ◽  
ChunFang Cai ◽  
YongDong Zhang ◽  
ShengYi Mao ◽  
YongGe Sun ◽  
...  
Keyword(s):  
Uranium Deposit ◽  
Sulfate Reducing Bacteria ◽  
Sulfate Reducing ◽  
Sulfur Oxidizing ◽  
Reducing Bacteria ◽  
Sulfur Oxidizing Bacteria

scholarly journals Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

2018 ◽  
Vol 20 (4) ◽  
pp. 673-685 ◽  
Author(s):  
Tatiana A. Vishnivetskaya ◽  
Haiyan Hu ◽  
Joy D. Van Nostrand ◽  
Ann M. Wymore ◽  
Xiaohang Xu ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Gene Diversity ◽  
Rice Paddy ◽  
Paddy Soils ◽  
Rice Paddies ◽  
Sulfate Reducing ◽  
Rice Paddy Soils ◽  
Reducing Bacteria

Sulfate-reducing bacteria and methanogens are the primary Hg-methylators in Chinese rice paddies.

Newly discovered hydrothermal fields along the ultraslow-spreading Southwest Indian Ridge around 63°E

2018 ◽  
Vol 37 (11) ◽  
pp. 61-67 ◽  
Author(s):  
Jie Chen ◽  
Chunhui Tao ◽  
Jin Liang ◽  
Shili Liao ◽  
Chuanwan Dong ◽  
...  
Keyword(s):  
Southwest Indian Ridge ◽  
Indian Ridge ◽  
Hydrothermal Fields

scholarly journals A deep-sea sulfate reducing bacterium directs the formation of zero-valent sulfur via sulfide oxidation

2021 ◽  
Author(s):  
Rui Liu ◽  
Yeqi Shan ◽  
Shichuan Xi ◽  
Xin Zhang ◽  
Chaomin Sun
Keyword(s):  
Deep Sea ◽  
Sulfide Oxidation ◽  
Sulfur Cycle ◽  
Cold Seep ◽  
Cold Seeps ◽  
Protein Activity ◽  
Quinone Oxidoreductase ◽  
Sulfate Reducing ◽  
Thiosulfate Reductase ◽  
Reducing Bacteria

Zero-valent sulfur (ZVS) is a critical intermediate in the biogeochemical sulfur cycle. Up to date, sulfur oxidizing bacteria have been demonstrated to dominate the formation of ZVS. In contrast, formation of ZVS mediated by sulfate reducing bacteria (SRB) has been rarely reported. Here, we report for the first time that a typical sulfate reducing bacterium Desulfovibrio marinus CS1 directs the formation of ZVS via sulfide oxidation. In combination with proteomic analysis and protein activity assays, thiosulfate reductase (PhsA) and sulfide: quinone oxidoreductase (SQR) were demonstrated to play key roles in driving ZVS formation. In this process, PhsA catalyzed thiosulfate to form sulfide, which was then oxidized by SQR to form ZVS. Consistently, the expressions of PhsA and SQR were significantly up-regulated in strain CS1 when cultured in the deep-sea cold seep, strongly indicating strain CS1 might form ZVS in its real inhabiting niches. Notably, homologs of phsA and sqr widely distributed in the metagenomes of deep-sea SRB. Given the high abundance of SRB in cold seeps, it is reasonable to propose that SRB might greatly contribute to the formation of ZVS in the deep-sea environments. Our findings add a new aspect to the current understanding of the source of ZVS.

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