Pyrite and the Global Environment

Pyrite ◽  
2015 ◽  
Author(s):  
David Rickard

The two basic processes concerning pyrite in the environment are the formation of pyrite, which usually involves reduction of sulfate to sulfide, and the destruction of pyrite, which usually involves oxidation of sulfide to sulfate. On an ideal planet these two processes might be exactly balanced. But pyrite is buried in sediments sometimes for hundreds of millions of years, and the sulfur in this buried pyrite is removed from the system, so the balance is disturbed. The lack of balance between sulfide oxidation and sulfate reduction powers a global dynamic cycle for sulfur. This would be complex enough if this were the whole story. However, as we have seen, both the reduction and oxidation arms of the global cycle are essentially biological—specifically microbiological—processes. This means that there is an intrinsic link between the sulfur cycle and life on Earth. In this chapter, we examine the central role that pyrite plays, and has played, in determining the surface environment of the planet. In doing so we reveal how pyrite, the humble iron sulfide mineral, is a key component of maintaining and developing life on Earth. In Chapter 4 we concluded that Mother Nature must be particularly fond of pyrite framboids: a thousand billion of these microscopic raspberry-like spheres are formed in sediments every second. If we translate this into sulfur production, some 60 million tons of sulfur is buried as pyrite in sediments each year. But this is only a fraction of the total amount of sulfide produced every year by sulfate-reducing bacteria. In 1982 the Danish geomicrobiologist Bo Barker Jørgensen discovered that as much as 90% of the sulfide produced by sulfate-reducing bacteria was rapidly reoxidized by sulfur-oxidizing microorganisms. Sulfate-reducing microorganisms actually produce about 300 million tons of sulfur each year, but about 240 million tons is reoxidized. The magnitude of the sulfide production by sulfate-reducing bacte­ria can be appreciated by comparison with the sulfur produced by volcanoes. As discussed in Chapter 5, it was previously supposed that all sulfur, and thus pyrite, had a volcanic origin. In fact volcanoes produce just 10 million tons of sulfur each year.

1996 ◽  
Vol 34 (5-6) ◽  
pp. 119-128 ◽  
Author(s):  
Ryoko Yamamoto-Ikemoto ◽  
Saburo Matsui ◽  
Tomoaki Komori ◽  
E. J. Bosque-Hamilton

Symbiosis and competition were examined among sulfate reducing bacteria (SRB), filamentous sulfur bacteria (FSB), denitrification bacteria (DNB) and poly-P accumulation bacteria (PAB) in the activated sludge of a municipal plant operated under anaerobic-oxic conditions. Batch experiments were carried out using settled sewage from the same plant as the substrate under several conditions. Under oxic conditions, both sulfate reduction and sulfide oxidation occurred simultaneously, making a symbiotic relationship of SRB and FSB for establishment of a sulfur cycle sustaining the energy requirements. Under anoxic conditions, denitrification was dominant because DNB outcompeted PAB and SRB for organic acids. Under anaerobic conditions, phosphate release and sulfate reduction occurred simultaneously. SRB produced for moles of acetate from four moles of propionate and/or unknown substances by reduction of three moles of sulfate. PAB competed with sulfate-reducing bacteria for organic acids such as propionate. However, PAB utilized acetate produced by SRB.


2018 ◽  
Vol 64 (9) ◽  
pp. 629-637 ◽  
Author(s):  
William Stanley ◽  
Gordon Southam

Growth of two dissimilatory sulfate-reducing bacteria, Desulfosporosinus orientis (gram-positive) and Desulfovibrio desulfuricans (gram-negative), in a chemically defined culture medium resulted in similar growth rates (doubling times for each culture = 2.8 h) and comparable rates of H2S generation (D. orientis = 0.19 nmol/L S2–per cell per h; D. desulfuricans = 0.12 nmol/L S2–per cell per h). Transmission electron microscopy of whole mounts and thin sections revealed that the iron sulfide mineral precipitates produced by the two cultures were morphologically different. The D. orientis culture flocculated, with the minerals occurring as subhedral plate-like precipitates, which nucleated on the cell wall during exponential growth producing extensive mineral aggregates following cell autolysis and endospore release. In contrast, the D. desulfuricans culture produced fine-grained colloidal or platy iron sulfide precipitates primarily within the bulk solution. Mineral analysis by scanning electron microscopy – energy dispersive spectroscopy indicated that neither culture promoted advanced mineral development beyond a 1:1 Fe:S stoichiometry. This analysis did not detect pyrite (FeS2). The average Fe:S ratios were 1 : 1.09 ± 0.03 at 24 h and 1 : 1.08 ± 0.03 at 72 h for D. orientis and 1 : 1.05 ± 0.02 at 24 h and 1 : 1.09 ± 0.07 at 72 h for D. desulfuricans. The formation of “biogenic” iron sulfides by dissimilatory sulfate-reducing bacteria is influenced by bacterial cell surface structure, chemistry, and growth strategy, i.e., mineral aggregation occurred with cell autolysis of the gram-positive bacterium.


2012 ◽  
Vol 57 (11) ◽  
pp. 1311-1319 ◽  
Author(s):  
Lei Jiang ◽  
ChunFang Cai ◽  
YongDong Zhang ◽  
ShengYi Mao ◽  
YongGe Sun ◽  
...  

2021 ◽  
Author(s):  
Rui Liu ◽  
Yeqi Shan ◽  
Shichuan Xi ◽  
Xin Zhang ◽  
Chaomin Sun

Zero-valent sulfur (ZVS) is a critical intermediate in the biogeochemical sulfur cycle. Up to date, sulfur oxidizing bacteria have been demonstrated to dominate the formation of ZVS. In contrast, formation of ZVS mediated by sulfate reducing bacteria (SRB) has been rarely reported. Here, we report for the first time that a typical sulfate reducing bacterium Desulfovibrio marinus CS1 directs the formation of ZVS via sulfide oxidation. In combination with proteomic analysis and protein activity assays, thiosulfate reductase (PhsA) and sulfide: quinone oxidoreductase (SQR) were demonstrated to play key roles in driving ZVS formation. In this process, PhsA catalyzed thiosulfate to form sulfide, which was then oxidized by SQR to form ZVS. Consistently, the expressions of PhsA and SQR were significantly up-regulated in strain CS1 when cultured in the deep-sea cold seep, strongly indicating strain CS1 might form ZVS in its real inhabiting niches. Notably, homologs of phsA and sqr widely distributed in the metagenomes of deep-sea SRB. Given the high abundance of SRB in cold seeps, it is reasonable to propose that SRB might greatly contribute to the formation of ZVS in the deep-sea environments. Our findings add a new aspect to the current understanding of the source of ZVS.


Author(s):  
Aung Kyaw Phyo ◽  
Yan Jia ◽  
Qiaoyi Tan ◽  
Heyun Sun ◽  
Yunfeng Liu ◽  
...  

Mining waste rocks containing sulfide minerals naturally provide the habitat for iron- and sulfur-oxidizing microbes, and they accelerate the generation of acid mine drainage (AMD) by promoting the oxidation of sulfide minerals. Sulfate-reducing bacteria (SRB) are sometimes employed to treat the AMD solution by microbial-induced metal sulfide precipitation. It was attempted for the first time to grow SRB directly in the pyritic heap bioleaching residue to compete with the local iron- and sulfur-oxidizing microbes. The acidic SRB and iron-reducing microbes were cultured at pH 2.0 and 3.0. After it was applied to the acidic heap bioleaching residue, it showed that the elevated pH and the organic matter was important for them to compete with the local bioleaching acidophiles. The incubation with the addition of organic matter promoted the growth of SRB and iron-reducing microbes to inhibit the iron- and sulfur-oxidizing microbes, especially organic matter together with some lime. Under the growth of the SRB and iron-reducing microbes, pH increased from acidic to nearly neutral, the Eh also decreased, and the metal, precipitated together with the microbial-generated sulfide, resulted in very low Cu in the residue pore solution. These results prove the inhibition of acid mine drainage directly in situ of the pyritic waste rocks by the promotion of the growth of SRB and iron-reducing microbes to compete with local iron and sulfur-oxidizing microbes, which can be used for the source control of AMD from the sulfidic waste rocks and the final remediation.


1979 ◽  
Vol 25 (12) ◽  
pp. 1433-1442 ◽  
Author(s):  
L. G. Leduc ◽  
G. D. Ferroni

Aerobic heterotrophic bacteria, anaerobic heterotrophic bacteria, ammonifying bacteria, sulfur-oxidizing bacteria, and sulfate-reducing bacteria were quantitated in Fairbank Lake, an oligotrophic to mesotrophic lake with a permanently cold hypolimnion, as a function of depth in three seasons. Representatives of each physiological group were recovered at an incubation temperature of 2 °C and for all the physiological groups the 2 °C counts were usually higher than the 37 °C counts, although sulfate-reducing bacteria were not recoverable at an incubation temperature of 37 °C. In addition, the numbers of each physiological type were generally higher in the sediments than in the water column, except in the case of sulfate-reducing bacteria for which the counts were low and often below the detection limit. Aerobic heterotrophic bacteria usually outnumbered the other physiological groups surveyed, and winter minima were characteristic of some of the physiological groups. A relatively stable density of anaerobic heterotrophic bacteria, as a function of sediment depth, was observed when the incubation temperature was 2 °C. At 37 °C, these anaerobes were not detected, and this was true for sulfate-reducing bacteria at both temperatures.Heterotrophic bacterial isolates from the permanently cold sediments were examined with regard to Gram reaction, the obligate or facultative nature of anaerobes, ability to use ecologically important substrates, psychrophilic type, and temperature range for growth. Isolates recovered at 2 °C were predominantly Gram-negative bacilli, whereas isolates recovered at 37 °C were predominantly Gram-positive bacilli. The anaerobic isolates were mainly Gram-positive bacilli regardless of the isolation temperature, and most of those examined were obligately anaerobic. Many of the isolates tested were positive for gelatinase, chitinase, amylase, and lipase, but none was positive for cellulase. Most of the sediment isolates were facultatively psychrophilic and a considerable fraction of the 37 °C isolates were facultative psychrophiles.


2007 ◽  
Vol 73 (7) ◽  
pp. 2093-2100 ◽  
Author(s):  
Mirjam Foti ◽  
Dimitry Y. Sorokin ◽  
Bart Lomans ◽  
Marc Mussman ◽  
Elena E. Zacharova ◽  
...  

ABSTRACT Soda lakes are naturally occurring highly alkaline and saline environments. Although the sulfur cycle is one of the most active element cycles in these lakes, little is known about the sulfate-reducing bacteria (SRB). In this study we investigated the diversity, activity, and abundance of SRB in sediment samples and enrichment cultures from a range of (hyper)saline soda lakes of the Kulunda Steppe in southeastern Siberia in Russia. For this purpose, a polyphasic approach was used, including denaturing gradient gel electrophoresis of dsr gene fragments, sulfate reduction rate measurements, serial dilutions, and quantitative real-time PCR (qPCR). Comparative sequence analysis revealed the presence of several novel clusters of SRB, mostly affiliated with members of the order Desulfovibrionales and family Desulfobacteraceae. We detected sulfate reducers and observed substantial sulfate reducing rates (between 12 and 423 μmol/dm3 day−1) for most lakes, even at a salinity of 475 g/liter. Enrichments were obtained at salt saturating conditions (4 M Na+), using H2 or volatile fatty acids as electron donors, and an extremely halophilic SRB, strain ASO3-1, was isolated. Furthermore, a high dsr gene copy number of 108 cells per ml was detected in a hypersaline lake by qPCR. Our results indicate the presence of diverse and active SRB communities in these extreme ecosystems.


mBio ◽  
2014 ◽  
Vol 5 (1) ◽  
Author(s):  
Huiluo Cao ◽  
Yong Wang ◽  
On On Lee ◽  
Xiang Zeng ◽  
Zongze Shao ◽  
...  

ABSTRACT Sulfur is an important element in sustaining microbial communities present in hydrothermal vents. Sulfur oxidation has been extensively studied due to its importance in chemosynthetic pathways in hydrothermal fields; however, less is known about sulfate reduction. Here, the metagenomes of hydrothermal chimneys located on the ultraslow-spreading Southwest Indian Ridge (SWIR) were pyrosequenced to elucidate the associated microbial sulfur cycle. A taxonomic summary of known genes revealed a few dominant bacteria that participated in the microbial sulfur cycle, particularly sulfate-reducing Deltaproteobacteria. The metagenomes studied contained highly abundant genes related to sulfur oxidation and reduction. Several carbon metabolic pathways, in particular the Calvin-Benson-Bassham pathway and the reductive tricarboxylic acid cycles for CO2 fixation, were identified in sulfur-oxidizing autotrophic bacteria. In contrast, highly abundant genes related to the oxidation of short-chain alkanes were grouped with sulfate-reducing bacteria, suggesting an important role for short-chain alkanes in the sulfur cycle. Furthermore, sulfur-oxidizing bacteria were associated with enrichment for genes involved in the denitrification pathway, while sulfate-reducing bacteria displayed enrichment for genes responsible for hydrogen utilization. In conclusion, this study provides insights regarding major microbial metabolic activities that are driven by the sulfur cycle in low-temperature hydrothermal chimneys present on an ultraslow midocean ridge. IMPORTANCE There have been limited studies on chimney sulfides located at ultraslow-spreading ridges. The analysis of metagenomes of hydrothermal chimneys on the ultraslow-spreading Southwest Indian Ridge suggests the presence of a microbial sulfur cycle. The sulfur cycle should be centralized within a microbial community that displays enrichment for sulfur metabolism-related genes. The present study elucidated a significant role of the microbial sulfur cycle in sustaining an entire microbial community in low-temperature hydrothermal chimneys on an ultraslow spreading midocean ridge, which has characteristics distinct from those of other types of hydrothermal fields.


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